Variant report

Variant	rs62409869
Chromosome Location	chr4:45065871-45065872
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11944003	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16858004	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62409605	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73129508	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531944	chr4:44299343-45200700	Active TSS Enhancers Weak transcription Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv1014327	chr4:44735209-45218149	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv878979	chr4:44871931-45102488	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	esv2752047	chr4:44968572-45072206	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv980502	chr4:45065237-45077593	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:45064800-45066600	Enhancers	Fetal Brain Female	brain
2	chr4:45065000-45066000	Enhancers	Fetal Brain Male	brain
3	chr4:45065200-45066000	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr4:45065200-45066000	Enhancers	Fetal Kidney	kidney
5	chr4:45065200-45066200	Enhancers	Brain Germinal Matrix	brain
6	chr4:45065200-45066200	Enhancers	Fetal Heart	heart
7	chr4:45065400-45066200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr4:45065400-45066400	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr4:45065600-45066000	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr4:45065600-45066000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr4:45065600-45066000	Enhancers	Fetal Lung	lung
12	chr4:45065600-45066200	Enhancers	iPS-20b Cell Line	embryonic stem cell
13	chr4:45065600-45066400	Enhancers	iPS-18 Cell Line	embryonic stem cell
14	chr4:45065600-45067800	Enhancers	Fetal Stomach	stomach
15	chr4:45065800-45066200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr4:45065800-45066800	Weak transcription	Fetal Muscle Leg	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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