Variant report
| Variant | rs62412631 |
|---|---|
| Chromosome Location | chr6:54699667-54699668 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:4)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:4 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr3:132135187..132137278-chr6:54698794..54701524,2 | MCF-7 | breast: | |
| 2 | chr6:54695865..54698667-chr6:54699652..54702495,2 | MCF-7 | breast: | |
| 3 | chr6:54696307..54700316-chr6:54709756..54713142,5 | MCF-7 | breast: | |
| 4 | chr6:54699132..54700691-chr6:54704780..54706904,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000224984 | Chromatin interaction |
| ENSG00000168143 | Chromatin interaction |
| ENSG00000138246 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:16)
| rs_ID | r2[population] |
|---|---|
| rs12664791 | 0.85[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs17682328 | 0.96[EUR][1000 genomes] |
| rs17682340 | 0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs17749547 | 0.83[AFR][1000 genomes];0.96[EUR][1000 genomes] |
| rs62412606 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs62412628 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs62412629 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs62412630 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs62412632 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs62412635 | 0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs62412645 | 0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs62412646 | 0.96[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs62412648 | 0.83[AFR][1000 genomes];0.93[EUR][1000 genomes] |
| rs62412649 | 0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs9357819 | 0.83[AFR][1000 genomes];0.96[EUR][1000 genomes] |
| rs9396000 | 0.96[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv885900 | chr6:54517968-54852462 | Active TSS Bivalent Enhancer Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 13 gene(s) | inside rSNPs | diseases |
| 2 | esv2763553 | chr6:54687979-54820487 | Weak transcription Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 11 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
