Variant report

Variant	rs62419039
Chromosome Location	chr6:120062388-120062389
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11962855	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11965272	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11970208	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56182614	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60410454	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62418972	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62418973	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62419004	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62419008	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62419009	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62419010	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62419013	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62419016	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62419018	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62419043	1.00[EUR][1000 genomes]
rs6908018	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6920735	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3447598	chr6:119558591-120119384	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	esv3389526	chr6:119558598-120190087	ZNF genes & repeats Enhancers Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
3	esv3442553	chr6:119742069-120076777	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription	Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv1028580	chr6:120032073-120095538	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:120060200-120063200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr6:120060200-120063600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr6:120061200-120063400	Weak transcription	Pancreatic Islets	Pancreatic Islet

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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