Variant report

Variant	rs62420260
Chromosome Location	chr6:70993269-70993270
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs16868975	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62420261	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6928611	0.90[ASN][1000 genomes]
rs72927370	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9446222	0.88[AMR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932111	chr6:70736835-71633094	Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv886142	chr6:70741209-71251421	Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv1027049	chr6:70961610-71561488	Strong transcription Active TSS Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
4	nsv524328	chr6:70961833-71558805	Flanking Bivalent TSS/Enh Active TSS Weak transcription Strong transcription ZNF genes & repeats Enhancers Bivalent Enhancer Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
5	nsv917312	chr6:70961903-71601688	Enhancers Genic enhancers Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:70990000-70993400	Enhancers	Fetal Brain Male	brain
2	chr6:70991600-70993400	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
3	chr6:70991800-70993400	Active TSS	H9 Cell Line	embryonic stem cell
4	chr6:70992000-70993400	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
5	chr6:70992000-70993400	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
6	chr6:70992200-70993400	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
7	chr6:70992200-70993400	Active TSS	Brain Cingulate Gyrus	brain
8	chr6:70993000-70993400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
9	chr6:70993000-70993400	Bivalent Enhancer	Right Ventricle	heart
10	chr6:70993200-70993400	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
11	chr6:70993200-70993400	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
12	chr6:70993200-70993400	Bivalent Enhancer	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr6:70993200-70993400	Bivalent Enhancer	Brain Anterior Caudate	brain
14	chr6:70993200-70993400	Enhancers	Brain Germinal Matrix	brain
15	chr6:70993200-70993400	Active TSS	Fetal Brain Female	brain
16	chr6:70993200-70993400	Bivalent Enhancer	Fetal Muscle Trunk	muscle
17	chr6:70993200-70993400	Bivalent Enhancer	Fetal Stomach	stomach

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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