Variant report

Variant	rs62421278
Chromosome Location	chr6:102602112-102602113
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs12527091	0.85[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs4458694	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62421280	0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62421281	0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62421282	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9485620	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9498942	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9498943	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9498944	0.93[EUR][1000 genomes]
rs9498945	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9498947	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032499	chr6:102069885-102720998	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv529294	chr6:102474505-103122745	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv604321	chr6:102518945-102603013	Enhancers Active TSS Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv518086	chr6:102571444-102603013	Enhancers Active TSS Flanking Active TSS Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv463996	chr6:102571444-102603013	Enhancers Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	nsv604322	chr6:102571444-102603013	Enhancers Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:102602000-102602600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr6:102602000-102602600	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
3	chr6:102602000-102602800	Enhancers	Skeletal Muscle Male	skeletal muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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