Variant report

Variant	rs624215
Chromosome Location	chr18:10141640-10141641
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr18:10114524..10117278-chr18:10140280..10142639,2	MCF-7	breast:
2	chr1:166774410..166776713-chr18:10141195..10143804,2	MCF-7	breast:
3	chr18:10128038..10130453-chr18:10139659..10142344,2	MCF-7	breast:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs1005930	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1005931	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs552587	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs606280	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv14276	chr18:10134666-10145472	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	esv3410028	chr18:10134811-10145112	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv2761990	chr18:10136596-10143650	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	esv3584724	chr18:10136596-10143650	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:68 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:10137400-10144400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr18:10137800-10144400	Enhancers	NHDF-Ad	bronchial
3	chr18:10138200-10142800	Enhancers	Fetal Stomach	stomach
4	chr18:10138200-10144200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr18:10139200-10142000	Enhancers	Fetal Thymus	thymus
6	chr18:10139400-10142800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr18:10139400-10143000	Enhancers	NH-A	brain
8	chr18:10139400-10143000	Enhancers	Osteobl	bone
9	chr18:10139600-10142200	Enhancers	Muscle Satellite Cultured Cells	--
10	chr18:10139600-10142600	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr18:10139600-10142800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr18:10139800-10141800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr18:10139800-10141800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr18:10139800-10141800	Enhancers	iPS-15b Cell Line	embryonic stem cell
15	chr18:10139800-10141800	Enhancers	Colonic Mucosa	Colon
16	chr18:10139800-10142000	Enhancers	H1 Cell Line	embryonic stem cell
17	chr18:10139800-10142000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr18:10139800-10142000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr18:10139800-10142000	Enhancers	Fetal Intestine Large	intestine
20	chr18:10139800-10142000	Enhancers	Lung	lung
21	chr18:10139800-10142000	Enhancers	Pancreas	Pancrea
22	chr18:10139800-10142000	Flanking Active TSS	A549	lung
23	chr18:10139800-10142000	Enhancers	Monocytes-CD14+_RO01746	blood
24	chr18:10139800-10142400	Enhancers	Primary monocytes fromperipheralblood	blood
25	chr18:10139800-10142800	Enhancers	ES-I3 Cell Line	embryonic stem cell
26	chr18:10139800-10142800	Enhancers	HUES6 Cell Line	embryonic stem cell
27	chr18:10139800-10142800	Enhancers	iPS-20b Cell Line	embryonic stem cell
28	chr18:10139800-10142800	Enhancers	HSMM	muscle
29	chr18:10139800-10143000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr18:10139800-10143000	Enhancers	Stomach Mucosa	stomach
31	chr18:10139800-10143000	Enhancers	HSMMtube	muscle
32	chr18:10139800-10143200	Enhancers	Placenta	Placenta
33	chr18:10139800-10144400	Enhancers	Adipose Nuclei	Adipose
34	chr18:10139800-10144400	Enhancers	Fetal Lung	lung
35	chr18:10139800-10144600	Enhancers	Fetal Muscle Leg	muscle
36	chr18:10140000-10141800	Enhancers	Sigmoid Colon	Sigmoid Colon
37	chr18:10140200-10141800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
38	chr18:10140200-10142200	Enhancers	Fetal Muscle Trunk	muscle
39	chr18:10140200-10142400	Weak transcription	Fetal Heart	heart
40	chr18:10140200-10144400	Enhancers	Skeletal Muscle Female	skeletal muscle
41	chr18:10140200-10150600	Weak transcription	Spleen	Spleen
42	chr18:10140400-10141800	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
43	chr18:10140400-10141800	Enhancers	Rectal Mucosa Donor 31	rectum
44	chr18:10140600-10141800	Enhancers	Fetal Intestine Small	intestine
45	chr18:10140600-10142600	Weak transcription	Left Ventricle	heart
46	chr18:10140600-10142600	Weak transcription	Ovary	ovary
47	chr18:10140600-10142600	Weak transcription	Psoas Muscle	Psoas
48	chr18:10140600-10143800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
49	chr18:10140600-10150600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
50	chr18:10141200-10141800	Enhancers	Rectal Mucosa Donor 29	rectum

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