Variant report
| Variant | rs62423859 |
|---|---|
| Chromosome Location | chr6:120501170-120501171 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr6:120499441..120501978-chr6:120507882..120510066,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:16)
| rs_ID | r2[population] |
|---|---|
| rs11153874 | 1.00[AMR][1000 genomes] |
| rs11153875 | 1.00[AMR][1000 genomes] |
| rs62423809 | 0.95[EUR][1000 genomes] |
| rs62423810 | 0.95[EUR][1000 genomes] |
| rs62423811 | 0.95[EUR][1000 genomes] |
| rs62423813 | 0.95[EUR][1000 genomes] |
| rs62423824 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs62423827 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs62423828 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs62423858 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs62425161 | 0.81[EUR][1000 genomes] |
| rs73517361 | 0.90[EUR][1000 genomes] |
| rs9387737 | 1.00[AMR][1000 genomes] |
| rs9387738 | 1.00[AMR][1000 genomes] |
| rs9398551 | 0.81[EUR][1000 genomes] |
| rs9401219 | 0.81[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv2753290 | chr6:120309301-120979301 | Enhancers Weak transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS | TF binding regionChromatin interactive regionlncRNAmiRNA | 5 gene(s) | inside rSNPs | diseases |
| 2 | esv2752474 | chr6:120309301-120982301 | Enhancers ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS | TF binding regionChromatin interactive regionlncRNAmiRNA | 5 gene(s) | inside rSNPs | diseases |
| 3 | nsv464033 | chr6:120367185-120636298 | Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 4 | nsv604564 | chr6:120367185-120636298 | Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 5 | nsv464035 | chr6:120424885-120509191 | Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 6 | nsv604566 | chr6:120424885-120509191 | Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:120500800-120501400 | Enhancers | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
