Variant report

Variant	rs62424115
Chromosome Location	chr6:120279059-120279060
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs62419163	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62419165	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62420514	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62424108	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62424116	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62424118	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62424122	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62424150	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886572	chr6:120165475-120284480	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	esv2763951	chr6:120195400-120297444	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:120278200-120279200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr6:120278200-120279400	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr6:120278400-120279200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
4	chr6:120278800-120281200	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr6:120278800-120281200	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr6:120279000-120279400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr6:120279000-120281000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr6:120279000-120281200	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr6:120279000-120288600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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