Variant report

Variant	rs62426102
Chromosome Location	chr6:149207882-149207883
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:149068357..149070773-chr6:149207147..149208759,2	MCF-7	breast:
2	chr6:149194314..149196748-chr6:149207020..149209121,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000111962	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11756841	0.81[ASN][1000 genomes]
rs11757486	0.80[ASN][1000 genomes]
rs11759833	0.80[ASN][1000 genomes]
rs13217636	0.83[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs1340498	0.80[ASN][1000 genomes]
rs1340499	0.80[ASN][1000 genomes]
rs1351698	0.80[ASN][1000 genomes]
rs1351699	0.80[ASN][1000 genomes]
rs1545840	0.82[ASN][1000 genomes]
rs1545841	0.82[ASN][1000 genomes]
rs1545842	0.82[ASN][1000 genomes]
rs17079451	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35526080	0.82[ASN][1000 genomes]
rs35748463	0.82[ASN][1000 genomes]
rs35946167	0.82[ASN][1000 genomes]
rs56904209	0.82[ASN][1000 genomes]
rs62426099	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62426100	0.82[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs62426110	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032690	chr6:149206106-149398712	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:75 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:149193200-149218800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
2	chr6:149195200-149210200	Weak transcription	Right Ventricle	heart
3	chr6:149196200-149208600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr6:149196400-149209800	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr6:149199400-149215600	Weak transcription	Spleen	Spleen
6	chr6:149200800-149208400	Weak transcription	Ovary	ovary
7	chr6:149201000-149210200	Weak transcription	Aorta	Aorta
8	chr6:149203200-149209600	Weak transcription	Fetal Heart	heart
9	chr6:149203400-149210200	Weak transcription	Fetal Thymus	thymus
10	chr6:149203400-149213400	Weak transcription	Dnd41	blood
11	chr6:149203800-149208200	Enhancers	iPS-18 Cell Line	embryonic stem cell
12	chr6:149204600-149210800	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr6:149204800-149210400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
14	chr6:149205200-149208000	Enhancers	HUES6 Cell Line	embryonic stem cell
15	chr6:149205200-149208000	Enhancers	iPS-15b Cell Line	embryonic stem cell
16	chr6:149205400-149208200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr6:149205400-149208400	Enhancers	HUES64 Cell Line	embryonic stem cell
18	chr6:149205400-149211200	Enhancers	Cortex derived primary cultured neurospheres	brain
19	chr6:149205600-149208000	Enhancers	ES-I3 Cell Line	embryonic stem cell
20	chr6:149205600-149208200	Weak transcription	Brain Substantia Nigra	brain
21	chr6:149205600-149208400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr6:149205600-149209400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr6:149205600-149209600	Weak transcription	Brain Inferior Temporal Lobe	brain
24	chr6:149205800-149208600	Enhancers	NH-A	brain
25	chr6:149205800-149208800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr6:149205800-149209000	Enhancers	Osteobl	bone
27	chr6:149205800-149209400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
28	chr6:149206000-149208000	Enhancers	NHLF	lung
29	chr6:149206000-149210800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
30	chr6:149206000-149212600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr6:149206200-149208200	Weak transcription	Esophagus	oesophagus
32	chr6:149206200-149210600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr6:149206200-149212600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr6:149206400-149208400	Weak transcription	Primary B cells from peripheral blood	blood
35	chr6:149206400-149208600	Enhancers	Muscle Satellite Cultured Cells	--
36	chr6:149206400-149208600	Enhancers	Rectal Smooth Muscle	rectum
37	chr6:149206400-149209000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
38	chr6:149206400-149210000	Weak transcription	Stomach Smooth Muscle	stomach
39	chr6:149206400-149210000	Weak transcription	HSMMtube	muscle
40	chr6:149206400-149211000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
41	chr6:149206400-149211800	Enhancers	Breast Myoepithelial Primary Cells	Breast
42	chr6:149206400-149212400	Enhancers	Fetal Muscle Leg	muscle
43	chr6:149206600-149208400	Weak transcription	Fetal Brain Male	brain
44	chr6:149206600-149208400	Weak transcription	Fetal Muscle Trunk	muscle
45	chr6:149207200-149208000	Enhancers	Brain Cingulate Gyrus	brain
46	chr6:149207200-149208000	Enhancers	Pancreas	Pancrea
47	chr6:149207200-149208600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr6:149207200-149210200	Weak transcription	Stomach Mucosa	stomach
49	chr6:149207200-149210200	Weak transcription	Hela-S3	cervix
50	chr6:149207200-149210400	Enhancers	Brain Anterior Caudate	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links