Variant report

Variant	rs62426555
Chromosome Location	chr6:79314618-79314619
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11756326	0.81[EUR][1000 genomes]
rs11757996	0.82[EUR][1000 genomes]
rs55644721	0.84[EUR][1000 genomes]
rs62425660	0.80[EUR][1000 genomes]
rs62426552	0.81[EUR][1000 genomes]
rs62426553	0.80[EUR][1000 genomes]
rs62426556	0.82[EUR][1000 genomes]
rs62426557	0.82[EUR][1000 genomes]
rs62426558	0.82[EUR][1000 genomes]
rs62427886	0.82[EUR][1000 genomes]
rs62427887	0.82[EUR][1000 genomes]
rs62427888	0.84[EUR][1000 genomes]
rs9448505	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886235	chr6:78861808-79369972	Enhancers Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv604011	chr6:79042990-79455282	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv886300	chr6:79129963-79341891	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv522646	chr6:79185106-79333988	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv1028767	chr6:79200713-79341224	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:79309600-79315000	Weak transcription	HSMM	muscle
2	chr6:79309800-79315000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr6:79309800-79315000	Weak transcription	A549	lung
4	chr6:79309800-79324800	Weak transcription	Aorta	Aorta
5	chr6:79310000-79314800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr6:79310000-79315000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr6:79310000-79315000	Weak transcription	NHLF	lung
8	chr6:79310000-79315200	Weak transcription	Hela-S3	cervix
9	chr6:79310200-79315200	Weak transcription	NHDF-Ad	bronchial
10	chr6:79310800-79315200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr6:79313600-79316800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr6:79313800-79315200	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr6:79314200-79315000	Enhancers	Muscle Satellite Cultured Cells	--
14	chr6:79314200-79315000	Enhancers	Osteobl	bone
15	chr6:79314400-79315000	Enhancers	HMEC	breast
16	chr6:79314400-79315000	Active TSS	HUVEC	blood vessel
17	chr6:79314400-79315000	Weak transcription	NHEK	skin
18	chr6:79314400-79315800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr6:79314600-79314800	Flanking Active TSS	NH-A	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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