Variant report

Variant	rs62427246
Chromosome Location	chr6:145140698-145140699
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:145137078..145138640-chr6:145140565..145142974,2	K562	blood:
2	chr6:145120568..145122991-chr6:145140332..145141910,2	K562	blood:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10499237	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11751954	0.81[AMR][1000 genomes]
rs11752756	0.81[AMR][1000 genomes]
rs11753714	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11754229	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11754249	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12525007	0.89[AMR][1000 genomes]
rs17074210	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17074221	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17074224	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4143181	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4266507	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4895653	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4895656	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4896739	0.89[AMR][1000 genomes]
rs4896741	0.90[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs4896746	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4896748	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4896757	0.83[AMR][1000 genomes]
rs62427228	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62427231	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62427233	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62427244	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62427245	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62427251	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62427253	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6920589	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6922804	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7744118	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9497087	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9497090	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9497091	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016747	chr6:144917411-145599874	Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv830833	chr6:145001310-145201143	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
3	nsv886740	chr6:145105354-145199259	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
4	nsv886741	chr6:145123326-145165362	ZNF genes & repeats Strong transcription Weak transcription Enhancers Genic enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:94 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:145084000-145155800	Weak transcription	Right Ventricle	heart
2	chr6:145091000-145145000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr6:145099600-145165800	Weak transcription	Small Intestine	intestine
4	chr6:145100400-145145000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr6:145115200-145155000	Weak transcription	Esophagus	oesophagus
6	chr6:145115800-145156600	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr6:145116000-145142000	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr6:145116000-145148600	Weak transcription	Placenta	Placenta
9	chr6:145116000-145154800	Weak transcription	Spleen	Spleen
10	chr6:145116000-145155800	Weak transcription	Skeletal Muscle Male	skeletal muscle
11	chr6:145116200-145154400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
12	chr6:145116400-145155600	Weak transcription	Stomach Smooth Muscle	stomach
13	chr6:145116400-145169000	Weak transcription	Rectal Smooth Muscle	rectum
14	chr6:145117400-145175200	Strong transcription	Monocytes-CD14+_RO01746	blood
15	chr6:145117600-145148400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
16	chr6:145119200-145155800	Weak transcription	Pancreas	Pancrea
17	chr6:145120000-145141600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
18	chr6:145120000-145145800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr6:145120000-145148800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr6:145120000-145155000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
21	chr6:145120200-145145800	Weak transcription	Fetal Intestine Small	intestine
22	chr6:145120200-145145800	Weak transcription	Fetal Stomach	stomach
23	chr6:145120200-145148400	Weak transcription	Ovary	ovary
24	chr6:145120200-145156400	Weak transcription	H1 Cell Line	embryonic stem cell
25	chr6:145120400-145145800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr6:145120600-145148200	Weak transcription	Duodenum Smooth Muscle	Duodenum
27	chr6:145120600-145148400	Weak transcription	Duodenum Mucosa	Duodenum
28	chr6:145120600-145148800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
29	chr6:145120600-145154800	Weak transcription	Aorta	Aorta
30	chr6:145120800-145145000	Weak transcription	HSMMtube	muscle
31	chr6:145120800-145148400	Weak transcription	Rectal Mucosa Donor 31	rectum
32	chr6:145120800-145155800	Weak transcription	Thymus	Thymus
33	chr6:145126000-145148200	Weak transcription	HUVEC	blood vessel
34	chr6:145126600-145169400	Weak transcription	Stomach Mucosa	stomach
35	chr6:145127000-145147800	Weak transcription	Fetal Muscle Trunk	muscle
36	chr6:145127000-145148600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
37	chr6:145127600-145148400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr6:145130600-145163800	Weak transcription	NHEK	skin
39	chr6:145130800-145147400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr6:145130800-145156800	Weak transcription	Osteobl	bone
41	chr6:145130800-145172200	Weak transcription	NH-A	brain
42	chr6:145131000-145141800	Weak transcription	NHDF-Ad	bronchial
43	chr6:145131000-145148600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
44	chr6:145131000-145156600	Weak transcription	NHLF	lung
45	chr6:145131000-145157000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
46	chr6:145131800-145141800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
47	chr6:145132400-145147800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
48	chr6:145132600-145141600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
49	chr6:145132600-145141800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
50	chr6:145132800-145145200	Weak transcription	Fetal Thymus	thymus

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links