The 2.0 version of rSNPBase

Variant report

Variant rs62429641
Chromosome Location chr6:143498611-143498612
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:66 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr6:143443800-143498800 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
2 chr6:143444600-143516400 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
3 chr6:143453000-143508600 Weak transcription Fetal Lung lung
4 chr6:143453000-143510600 Weak transcription Brain Inferior Temporal Lobe brain
5 chr6:143458800-143529200 Weak transcription Primary T cells from cord blood blood
6 chr6:143459600-143505400 Weak transcription HUES48 Cell Line embryonic stem cell
7 chr6:143463000-143508400 Weak transcription Stomach Smooth Muscle stomach
8 chr6:143477000-143501200 Weak transcription Right Atrium heart
9 chr6:143479600-143499400 Weak transcription Rectal Mucosa Donor 31 rectum
10 chr6:143479600-143508600 Weak transcription Colon Smooth Muscle Colon
11 chr6:143479600-143534600 Weak transcription Gastric stomach
12 chr6:143480200-143501200 Weak transcription Brain Angular Gyrus brain
13 chr6:143482400-143511200 Weak transcription Primary T helper naive cells fromperipheralblood blood
14 chr6:143484200-143500000 Weak transcription Fetal Heart heart
15 chr6:143484400-143519800 Weak transcription Primary neutrophils fromperipheralblood blood
16 chr6:143485200-143509400 Weak transcription H1 Cell Line embryonic stem cell
17 chr6:143486000-143501400 Weak transcription Skeletal Muscle Male skeletal muscle
18 chr6:143486000-143510400 Weak transcription Brain Anterior Caudate brain
19 chr6:143487000-143516600 Weak transcription Sigmoid Colon Sigmoid Colon
20 chr6:143487200-143506400 Weak transcription Primary T killer memory cells from peripheral blood blood
21 chr6:143487600-143508600 Weak transcription Ovary ovary
22 chr6:143487600-143518000 Weak transcription Fetal Kidney kidney
23 chr6:143487800-143498800 Weak transcription Left Ventricle heart
24 chr6:143488400-143510400 Weak transcription iPS-20b Cell Line embryonic stem cell
25 chr6:143488600-143506400 Weak transcription Rectal Mucosa Donor 29 rectum
26 chr6:143495800-143500600 Weak transcription Primary mononuclear cells fromperipheralblood Blood
27 chr6:143495800-143509800 Weak transcription Primary B cells from cord blood blood
28 chr6:143496000-143501200 Weak transcription Skeletal Muscle Female skeletal muscle
29 chr6:143496000-143509400 Weak transcription Right Ventricle heart
30 chr6:143496400-143500600 Strong transcription Fetal Intestine Large intestine
31 chr6:143496600-143505600 Weak transcription Brain Hippocampus Middle brain
32 chr6:143496600-143508400 Weak transcription Duodenum Smooth Muscle Duodenum
33 chr6:143497000-143499200 Enhancers HMEC breast
34 chr6:143497000-143499600 Enhancers H1 Derived Mesenchymal Stem Cells ES cell derived
35 chr6:143497200-143498800 Enhancers Osteobl bone
36 chr6:143497400-143500400 Genic enhancers K562 blood
37 chr6:143497400-143518600 Weak transcription Pancreas Pancrea
38 chr6:143497600-143498800 Enhancers HSMM muscle
39 chr6:143497600-143500200 Strong transcription Liver Liver
40 chr6:143497800-143498800 Enhancers NHEK skin
41 chr6:143497800-143522800 Weak transcription Fetal Muscle Trunk muscle
42 chr6:143498000-143498800 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
43 chr6:143498000-143498800 Enhancers Foreskin Fibroblast Primary Cells skin01 Skin
44 chr6:143498000-143499000 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
45 chr6:143498000-143499400 Weak transcription Aorta Aorta
46 chr6:143498000-143500400 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
47 chr6:143498000-143501200 Weak transcription Adipose Nuclei Adipose
48 chr6:143498000-143503600 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
49 chr6:143498000-143505000 Weak transcription Fetal Stomach stomach
50 chr6:143498000-143507600 Weak transcription Fetal Brain Female brain

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Last update: Aug 31, 2015