Variant report

Variant	rs62430703
Chromosome Location	chr6:143153251-143153252
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:143152862..143155335-chr6:143156490..143158153,2	MCF-7	breast:
2	chr6:143146689..143151970-chr6:143152746..143156314,7	MCF-7	breast:
3	chr6:143146184..143148746-chr6:143152245..143154494,2	MCF-7	breast:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs12214216	1.00[ASN][1000 genomes]
rs62430690	1.00[ASN][1000 genomes]
rs6900521	1.00[ASN][1000 genomes]
rs6912129	0.91[EUR][1000 genomes]
rs72984377	1.00[ASN][1000 genomes]
rs72995085	1.00[ASN][1000 genomes]
rs802618	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830829	chr6:143058408-143218077	Active TSS Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
2	nsv1019558	chr6:143121577-143154554	Enhancers Active TSS Weak transcription Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:86 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143141600-143153800	Weak transcription	HSMMtube	muscle
2	chr6:143142000-143153400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
3	chr6:143142200-143153400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr6:143142600-143153800	Weak transcription	Primary hematopoietic stem cells	blood
5	chr6:143142600-143155000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr6:143142800-143155000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr6:143143200-143153800	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr6:143143400-143157400	Weak transcription	Rectal Smooth Muscle	rectum
9	chr6:143143400-143159600	Weak transcription	HepG2	liver
10	chr6:143143400-143160600	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr6:143144000-143153800	Weak transcription	HSMM	muscle
12	chr6:143144000-143165800	Weak transcription	Liver	Liver
13	chr6:143144200-143154200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
14	chr6:143144200-143156000	Weak transcription	Primary B cells from peripheral blood	blood
15	chr6:143144600-143163000	Weak transcription	Dnd41	blood
16	chr6:143144600-143163200	Weak transcription	Fetal Thymus	thymus
17	chr6:143144800-143162400	Weak transcription	Brain Cingulate Gyrus	brain
18	chr6:143144800-143163000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr6:143144800-143166800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr6:143146000-143153600	Weak transcription	NHLF	lung
21	chr6:143146000-143154000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
22	chr6:143146000-143154200	Weak transcription	Brain Anterior Caudate	brain
23	chr6:143146000-143156200	Weak transcription	Brain Angular Gyrus	brain
24	chr6:143146600-143153800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
25	chr6:143146600-143153800	Weak transcription	Small Intestine	intestine
26	chr6:143147200-143154400	Enhancers	Fetal Brain Male	brain
27	chr6:143149000-143153600	Weak transcription	A549	lung
28	chr6:143149000-143154800	Weak transcription	Fetal Muscle Leg	muscle
29	chr6:143149200-143166000	Weak transcription	Placenta Amnion	Placenta Amnion
30	chr6:143149400-143153600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr6:143149400-143153600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr6:143149400-143153800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
33	chr6:143149400-143153800	Weak transcription	Hela-S3	cervix
34	chr6:143149400-143153800	Weak transcription	HMEC	breast
35	chr6:143149400-143153800	Weak transcription	HUVEC	blood vessel
36	chr6:143149400-143154200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
37	chr6:143149400-143163200	Weak transcription	Adipose Nuclei	Adipose
38	chr6:143149400-143163600	Weak transcription	Fetal Lung	lung
39	chr6:143149600-143153800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
40	chr6:143149600-143153800	Weak transcription	NHEK	skin
41	chr6:143149600-143154200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
42	chr6:143149600-143165600	Weak transcription	Colon Smooth Muscle	Colon
43	chr6:143149800-143154000	Weak transcription	Duodenum Mucosa	Duodenum
44	chr6:143149800-143154200	Weak transcription	Sigmoid Colon	Sigmoid Colon
45	chr6:143150600-143156400	Genic enhancers	Primary T helper cells PMA-I stimulated	--
46	chr6:143151000-143158000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
47	chr6:143151400-143163200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
48	chr6:143151600-143153400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
49	chr6:143151600-143153600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
50	chr6:143152000-143153600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links