Variant report

Variant	rs62433406
Chromosome Location	chr7:8064513-8064514
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:8063593..8066315-chr7:8067381..8070107,2	MCF-7	breast:
2	chr7:8062440..8065234-chr7:8085232..8088218,2	MCF-7	breast:

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs12056007	0.83[AMR][1000 genomes]
rs16872488	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17141597	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17141865	0.89[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs17141876	0.89[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs17142053	0.94[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17142255	0.92[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs17142349	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17142477	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17142679	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17142685	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17142716	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs58145708	0.92[AMR][1000 genomes]
rs58348680	0.89[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs58707745	0.94[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs59427694	0.94[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs59437461	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs59697814	0.94[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs60920460	0.89[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs61351831	0.89[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs62433384	0.94[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62433385	0.94[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62433405	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62433407	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62433408	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62433442	0.94[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs62433444	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62433449	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62435365	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs62435371	0.86[AMR][1000 genomes]
rs9640055	0.87[AMR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026758	chr7:7187491-8075259	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	84 gene(s)	inside rSNPs	diseases
2	esv2752177	chr7:7729247-8177689	Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv917172	chr7:7854632-8807385	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
4	esv3346837	chr7:7915187-8068557	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
5	nsv518779	chr7:8055664-8077359	ZNF genes & repeats Weak transcription Strong transcription Enhancers Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	esv1793794	chr7:8064509-8078802	ZNF genes & repeats Strong transcription Weak transcription Enhancers Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:108 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:8036400-8077400	Weak transcription	Right Ventricle	heart
2	chr7:8036600-8074600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr7:8038000-8066000	Weak transcription	Pancreas	Pancrea
4	chr7:8038400-8066000	Weak transcription	Spleen	Spleen
5	chr7:8041600-8095000	Weak transcription	Gastric	stomach
6	chr7:8041800-8075400	Weak transcription	Brain Hippocampus Middle	brain
7	chr7:8043000-8099200	Weak transcription	Colon Smooth Muscle	Colon
8	chr7:8043600-8068400	Weak transcription	NH-A	brain
9	chr7:8043800-8064600	Weak transcription	Small Intestine	intestine
10	chr7:8044200-8066000	Weak transcription	Lung	lung
11	chr7:8044600-8074400	Weak transcription	Brain Angular Gyrus	brain
12	chr7:8045200-8066000	Weak transcription	Fetal Brain Male	brain
13	chr7:8046800-8066000	Weak transcription	Left Ventricle	heart
14	chr7:8046800-8074400	Weak transcription	Brain Substantia Nigra	brain
15	chr7:8047000-8066000	Weak transcription	Rectal Smooth Muscle	rectum
16	chr7:8047200-8065200	Weak transcription	Fetal Kidney	kidney
17	chr7:8047200-8065400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr7:8047200-8066000	Weak transcription	Brain Inferior Temporal Lobe	brain
19	chr7:8047200-8066200	Weak transcription	Skeletal Muscle Female	skeletal muscle
20	chr7:8047400-8066000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
21	chr7:8047400-8066000	Weak transcription	Brain Cingulate Gyrus	brain
22	chr7:8047400-8066000	Weak transcription	Rectal Mucosa Donor 31	rectum
23	chr7:8047400-8075600	Weak transcription	Skeletal Muscle Male	skeletal muscle
24	chr7:8047600-8108200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
25	chr7:8049200-8066000	Weak transcription	Fetal Heart	heart
26	chr7:8057200-8067600	Weak transcription	Colonic Mucosa	Colon
27	chr7:8057400-8065400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
28	chr7:8057400-8065400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
29	chr7:8058800-8069400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
30	chr7:8059200-8064600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
31	chr7:8059200-8067800	ZNF genes & repeats	GM12878-XiMat	blood
32	chr7:8061200-8070000	Weak transcription	Stomach Mucosa	stomach
33	chr7:8061400-8064600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
34	chr7:8061800-8064600	Strong transcription	Placenta	Placenta
35	chr7:8061800-8066000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
36	chr7:8062200-8064800	Strong transcription	Primary T cells fromperipheralblood	blood
37	chr7:8062200-8065000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
38	chr7:8062200-8065000	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
39	chr7:8062200-8066800	Strong transcription	Adipose Nuclei	Adipose
40	chr7:8062200-8066800	Strong transcription	Duodenum Mucosa	Duodenum
41	chr7:8062200-8068000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
42	chr7:8062600-8065000	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
43	chr7:8062600-8065000	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
44	chr7:8062600-8065000	Strong transcription	Fetal Stomach	stomach
45	chr7:8062600-8066000	Weak transcription	Brain Anterior Caudate	brain
46	chr7:8062800-8066800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
47	chr7:8062800-8067600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
48	chr7:8063400-8064600	Strong transcription	Primary T helper cells fromperipheralblood	blood
49	chr7:8063400-8066400	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
50	chr7:8063400-8066400	Strong transcription	Stomach Smooth Muscle	stomach

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