The 2.0 version of rSNPBase

Variant report

Variant rs62435617
Chromosome Location chr6:147574192-147574193
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:105 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr6:147527400-147576400 Weak transcription HSMMtube muscle
2 chr6:147527800-147586800 Weak transcription Primary T helper 17 cells PMA-I stimulated --
3 chr6:147542400-147590800 Weak transcription Placenta Amnion Placenta Amnion
4 chr6:147543800-147588800 Weak transcription Primary T killer memory cells from peripheral blood blood
5 chr6:147544200-147574200 Weak transcription H9 Cell Line embryonic stem cell
6 chr6:147544400-147574800 Weak transcription HepG2 liver
7 chr6:147545600-147617000 Weak transcription Small Intestine intestine
8 chr6:147549400-147616800 Weak transcription Primary T killer naive cells fromperipheralblood blood
9 chr6:147549600-147578200 Weak transcription Fetal Heart heart
10 chr6:147549600-147584600 Weak transcription Primary T helper naive cells fromperipheralblood blood
11 chr6:147549600-147587200 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
12 chr6:147552600-147591800 Weak transcription HUVEC blood vessel
13 chr6:147554600-147590000 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
14 chr6:147556200-147574600 Strong transcription Muscle Satellite Cultured Cells --
15 chr6:147560200-147574200 Weak transcription Dnd41 blood
16 chr6:147561600-147600800 Weak transcription Stomach Smooth Muscle stomach
17 chr6:147562600-147599800 Weak transcription Primary T helper naive cells from peripheral blood blood
18 chr6:147564000-147586800 Weak transcription HMEC breast
19 chr6:147564400-147604600 Weak transcription NHLF lung
20 chr6:147564400-147619000 Weak transcription Hela-S3 cervix
21 chr6:147564600-147608800 Weak transcription NH-A brain
22 chr6:147564600-147617000 Weak transcription Fetal Kidney kidney
23 chr6:147566200-147574400 Strong transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
24 chr6:147566600-147574600 Strong transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
25 chr6:147566800-147574200 Strong transcription Foreskin Fibroblast Primary Cells skin01 Skin
26 chr6:147569600-147574200 Strong transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
27 chr6:147570200-147587200 Weak transcription Primary T regulatory cells fromperipheralblood blood
28 chr6:147570600-147609000 Weak transcription Brain Substantia Nigra brain
29 chr6:147571200-147574200 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
30 chr6:147571200-147574600 ZNF genes & repeats hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
31 chr6:147571200-147574600 ZNF genes & repeats Primary hematopoietic stem cells G-CSF-mobilized Female --
32 chr6:147571400-147574600 ZNF genes & repeats Primary hematopoietic stem cells G-CSF-mobilized Male --
33 chr6:147571400-147574800 Weak transcription Cortex derived primary cultured neurospheres brain
34 chr6:147571400-147599200 Weak transcription iPS-18 Cell Line embryonic stem cell
35 chr6:147571400-147599400 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
36 chr6:147571600-147574200 ZNF genes & repeats Fetal Brain Female brain
37 chr6:147572200-147574200 Strong transcription Brain Inferior Temporal Lobe brain
38 chr6:147572400-147590000 Weak transcription Primary T cells from cord blood blood
39 chr6:147572600-147581200 Weak transcription Osteobl bone
40 chr6:147572600-147584200 Weak transcription NHDF-Ad bronchial
41 chr6:147572600-147588400 Weak transcription HUES48 Cell Line embryonic stem cell
42 chr6:147572600-147588400 Weak transcription Primary B cells from peripheral blood blood
43 chr6:147572600-147605800 Weak transcription Brain Anterior Caudate brain
44 chr6:147572600-147609600 Weak transcription Thymus Thymus
45 chr6:147572600-147610200 Weak transcription Esophagus oesophagus
46 chr6:147572800-147575200 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
47 chr6:147572800-147576200 Weak transcription Colonic Mucosa Colon
48 chr6:147572800-147584200 Weak transcription Primary T helper cells fromperipheralblood blood
49 chr6:147572800-147584600 Weak transcription Brain Hippocampus Middle brain
50 chr6:147572800-147588400 Weak transcription Liver Liver

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Last update: Aug 31, 2015