Variant report
| Variant | rs62437215 |
|---|---|
| Chromosome Location | chr6:127339344-127339345 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:32)
| rs_ID | r2[population] |
|---|---|
| rs56721799 | 1.00[ASN][1000 genomes] |
| rs56985778 | 1.00[ASN][1000 genomes] |
| rs57410571 | 1.00[ASN][1000 genomes] |
| rs59860979 | 1.00[ASN][1000 genomes] |
| rs61148836 | 0.95[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs62437164 | 1.00[ASN][1000 genomes] |
| rs62437169 | 1.00[ASN][1000 genomes] |
| rs62437170 | 1.00[ASN][1000 genomes] |
| rs62437171 | 1.00[ASN][1000 genomes] |
| rs62437172 | 1.00[ASN][1000 genomes] |
| rs62437173 | 1.00[ASN][1000 genomes] |
| rs62437174 | 1.00[ASN][1000 genomes] |
| rs62437175 | 1.00[ASN][1000 genomes] |
| rs62437182 | 1.00[ASN][1000 genomes] |
| rs62437206 | 0.95[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs62437207 | 0.95[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs62437208 | 0.95[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs62437211 | 0.87[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs62437213 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs62437214 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs62437216 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs62437218 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs62437219 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs62437220 | 1.00[ASN][1000 genomes] |
| rs62437227 | 1.00[ASN][1000 genomes] |
| rs62437231 | 1.00[ASN][1000 genomes] |
| rs62439182 | 1.00[ASN][1000 genomes] |
| rs62439183 | 1.00[ASN][1000 genomes] |
| rs62439187 | 1.00[ASN][1000 genomes] |
| rs62439192 | 1.00[ASN][1000 genomes] |
| rs6909273 | 1.00[ASN][1000 genomes] |
| rs72974086 | 1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1026498 | chr6:126812609-127397240 | Weak transcription Bivalent Enhancer Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 13 gene(s) | inside rSNPs | diseases |
| 2 | nsv1024206 | chr6:126873187-127475713 | Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 14 gene(s) | inside rSNPs | diseases |
| 3 | nsv538438 | chr6:126873187-127475713 | Bivalent Enhancer Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 14 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:127336000-127340000 | Weak transcription | A549 | lung |
| 2 | chr6:127338400-127339400 | Enhancers | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
