Variant report

Variant	rs62438853
Chromosome Location	chr6:145246705-145246706
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs12175408	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12175421	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13195749	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13198108	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13201654	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13210889	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13217690	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1338696	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1338697	0.89[EUR][1000 genomes]
rs1538401	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1538402	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2153108	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2153109	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2153110	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2185143	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs35361162	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4143178	0.84[EUR][1000 genomes]
rs4331996	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4331997	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4526219	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4637659	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4895660	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4896761	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4896762	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs57590687	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6570657	0.88[EUR][1000 genomes]
rs6570659	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6570660	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6570661	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6909971	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6910398	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6914560	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6931199	0.84[EUR][1000 genomes]
rs6934724	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6935054	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6935093	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6935178	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6935436	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7742815	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7742893	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7743204	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7762951	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9283117	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9321998	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9321999	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9322000	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9322001	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9322002	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9376873	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9376877	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9386088	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9390249	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9390250	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9399516	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9399517	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9403622	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9403624	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9403625	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9403626	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9403630	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9497118	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9497128	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9688347	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9688355	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9688729	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016747	chr6:144917411-145599874	Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	esv1850377	chr6:145199259-145319640	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:145244600-145246800	Active TSS	HUES6 Cell Line	embryonic stem cell
2	chr6:145246000-145246800	Enhancers	Adipose Nuclei	Adipose
3	chr6:145246200-145246800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr6:145246600-145247600	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links