Variant report

Variant	rs62438854
Chromosome Location	chr6:145247531-145247532
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs12524292	0.96[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1338698	0.96[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs17217446	0.87[AMR][1000 genomes]
rs17805722	0.87[AMR][1000 genomes]
rs4896764	0.96[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62429684	0.85[AMR][1000 genomes]
rs62429687	0.87[AMR][1000 genomes]
rs62438851	0.80[AMR][1000 genomes]
rs62438856	0.94[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9497102	0.83[AMR][1000 genomes]
rs9497119	0.82[AMR][1000 genomes]
rs9986446	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016747	chr6:144917411-145599874	Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	esv1850377	chr6:145199259-145319640	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:145246600-145247600	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr6:145246800-145250000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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