Variant report

Variant	rs62439472
Chromosome Location	chr6:87832428-87832429
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10085214	0.81[EUR][1000 genomes]
rs10806390	0.81[EUR][1000 genomes]
rs11753770	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13214688	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62439538	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024751	chr6:87433199-87908721	Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	nsv604114	chr6:87816905-87906053	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	esv2758067	chr6:87817883-87992957	Enhancers Bivalent Enhancer ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	esv2759453	chr6:87817883-87992957	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:87831800-87832600	Enhancers	Placenta	Placenta
2	chr6:87832200-87832600	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr6:87832200-87832600	Enhancers	Pancreas	Pancrea
4	chr6:87832200-87832600	Active TSS	Right Atrium	heart
5	chr6:87832200-87832800	Active TSS	iPS-15b Cell Line	embryonic stem cell
6	chr6:87832200-87832800	Bivalent/Poised TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr6:87832200-87832800	Bivalent/Poised TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr6:87832200-87832800	Bivalent/Poised TSS	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr6:87832200-87832800	Bivalent/Poised TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr6:87832200-87832800	Active TSS	Right Ventricle	heart
11	chr6:87832200-87832800	Bivalent/Poised TSS	HUVEC	blood vessel
12	chr6:87832400-87832600	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr6:87832400-87832800	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr6:87832400-87832800	Bivalent/Poised TSS	Foreskin Melanocyte Primary Cells skin03	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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