Variant report

Variant	rs62439473
Chromosome Location	chr7:16136341-16136342
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs17616119	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs62439133	1.00[AFR][1000 genomes]
rs62440367	1.00[AFR][1000 genomes]
rs62440780	1.00[AFR][1000 genomes]
rs62440809	1.00[AFR][1000 genomes]
rs62440844	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016642	chr7:15884061-16799788	Genic enhancers Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	nsv949309	chr7:15986709-16236162	ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv949555	chr7:16078412-16279290	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:16131800-16138000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr7:16132000-16137400	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr7:16132400-16137000	Weak transcription	HUVEC	blood vessel
4	chr7:16135600-16138400	Weak transcription	Fetal Heart	heart
5	chr7:16135800-16137800	Weak transcription	Fetal Lung	lung
6	chr7:16135800-16145200	Weak transcription	Left Ventricle	heart
7	chr7:16136000-16137800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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