Variant report

Variant	rs62441885
Chromosome Location	chr7:16348059-16348060
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:16333849..16337358-chr7:16346440..16349011,3	K562	blood:
2	chr7:16347978..16350861-chr7:16364873..16367398,2	K562	blood:
3	chr7:16333754..16335349-chr7:16345715..16348508,2	K562	blood:

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10225225	0.83[EUR][1000 genomes]
rs10225332	0.85[EUR][1000 genomes]
rs10255266	0.82[EUR][1000 genomes]
rs10280525	0.85[EUR][1000 genomes]
rs10281901	0.94[EUR][1000 genomes]
rs10950607	0.85[EUR][1000 genomes]
rs10950612	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10950615	0.82[EUR][1000 genomes]
rs10950617	0.82[EUR][1000 genomes]
rs11773382	0.85[EUR][1000 genomes]
rs12699785	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13225577	0.85[EUR][1000 genomes]
rs1548568	0.85[EUR][1000 genomes]
rs1548569	0.85[EUR][1000 genomes]
rs1548570	0.84[EUR][1000 genomes]
rs1548571	0.85[EUR][1000 genomes]
rs2178598	0.83[EUR][1000 genomes]
rs2214623	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2222862	0.81[EUR][1000 genomes]
rs4146016	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4236286	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4370432	0.82[EUR][1000 genomes]
rs4559135	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4721491	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4721493	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs55698830	0.82[EUR][1000 genomes]
rs56406025	0.82[EUR][1000 genomes]
rs58665173	0.82[EUR][1000 genomes]
rs59806774	0.82[EUR][1000 genomes]
rs59866961	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6461235	0.85[EUR][1000 genomes]
rs6461238	0.85[EUR][1000 genomes]
rs6958419	0.94[EUR][1000 genomes]
rs6959691	0.85[EUR][1000 genomes]
rs6968164	0.85[EUR][1000 genomes]
rs6973038	0.85[EUR][1000 genomes]
rs6973859	0.85[EUR][1000 genomes]
rs6977335	0.85[EUR][1000 genomes]
rs6978854	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7787308	0.82[EUR][1000 genomes]
rs7805909	0.81[EUR][1000 genomes]
rs7808683	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7810150	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9639259	0.85[EUR][1000 genomes]
rs9655134	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016642	chr7:15884061-16799788	Genic enhancers Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	nsv948950	chr7:16168925-16395434	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
3	esv2759514	chr7:16236162-16527390	Flanking Active TSS Enhancers Active TSS Strong transcription Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
4	nsv1022388	chr7:16251992-16431864	Enhancers ZNF genes & repeats Weak transcription Genic enhancers Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
5	esv2758105	chr7:16272822-16527390	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
6	esv2757215	chr7:16346139-16458474	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
7	nsv887744	chr7:16346213-16401190	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv887745	chr7:16346213-16405309	Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:16313600-16348200	Weak transcription	Gastric	stomach
2	chr7:16333400-16349000	Weak transcription	Psoas Muscle	Psoas
3	chr7:16347600-16356200	Weak transcription	K562	blood

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