Variant report

Variant	rs62442576
Chromosome Location	chr7:38672217-38672218
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:47)
CpG islands
(count:0)
Chromatin interactive
region (count:1)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:47 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr7:38672153-38672267	Spleen_OC	spleen:	n/a	n/a
2	CTCF	chr7:38672160-38672310	GM12868	blood:	n/a	n/a
3	CTCF	chr7:38672180-38672330	MCF-7	breast:	n/a	n/a
4	CTCF	chr7:38672080-38672230	HRPEpiC	eye:	n/a	n/a
5	CTCF	chr7:38672098-38672311	MCF-7	breast:	n/a	n/a
6	CTCF	chr7:38672136-38672270	GM12892	blood:	n/a	n/a
7	CTCF	chr7:38672101-38672312	MCF-7	breast:	n/a	n/a
8	CTCF	chr7:38672100-38672250	GM12873	blood:	n/a	n/a
9	CTCF	chr7:38672080-38672230	HMF	breast:	n/a	n/a
10	CTCF	chr7:38672131-38672299	GM12878	blood:	n/a	n/a
11	CTCF	chr7:38672074-38672333	MCF-7	breast:	n/a	n/a
12	CTCF	chr7:38672145-38672285	H1-hESC	embryonic stem cell:	n/a	n/a
13	CTCF	chr7:38672160-38672310	GM12875	blood:	n/a	n/a
14	CTCF	chr7:38672131-38672272	GM12891	blood:	n/a	n/a
15	RAD21	chr7:38671951-38672310	MCF-7	breast:	n/a	n/a
16	CTCF	chr7:38672197-38672249	HepG2	liver:	n/a	n/a
17	CTCF	chr7:38672120-38672270	HCPEpiC	choroid plexus:	n/a	n/a
18	CTCF	chr7:38672149-38672283	GM19240	blood:	n/a	n/a
19	CTCF	chr7:38672085-38672313	MCF-7	breast:	n/a	n/a
20	CTCF	chr7:38672100-38672250	GM12865	blood:	n/a	n/a
21	CTCF	chr7:38672029-38672416	MCF-7	breast:	n/a	n/a
22	CTCF	chr7:38672180-38672330	GM06990	blood:	n/a	n/a
23	CTCF	chr7:38672082-38672282	GM12878	blood:	n/a	n/a
24	RAD21	chr7:38671964-38672316	MCF-7	breast:	n/a	n/a
25	RAD21	chr7:38671961-38672425	H1-hESC	embryonic stem cell:	n/a	n/a
26	CTCF	chr7:38672121-38672295	Gliobla	brain:	n/a	n/a
27	CTCF	chr7:38672160-38672310	SAEC	small airway:	n/a	n/a
28	CTCF	chr7:38672100-38672250	HBMEC	blood vessel:	n/a	n/a
29	CTCF	chr7:38672100-38672250	WERI-Rb-1	eye:	n/a	n/a
30	CTCF	chr7:38672087-38672325	MCF-7	breast:	n/a	n/a
31	CTCF	chr7:38672160-38672310	HEK293	kidney:	n/a	n/a
32	CTCF	chr7:38672142-38672268	NHEK	skin:	n/a	n/a
33	CTCF	chr7:38672021-38672280	H1-hESC	embryonic stem cell:	n/a	n/a
34	CTCF	chr7:38672100-38672250	MCF-7	breast:	n/a	n/a
35	CTCF	chr7:38672002-38672308	MCF-7	breast:	n/a	n/a
36	CTCF	chr7:38672179-38672253	Medullo	brain:	n/a	n/a
37	CTCF	chr7:38671979-38672344	HCT-116	colon:	n/a	n/a
38	CTCF	chr7:38672160-38672283	HUVEC	blood vessel:	n/a	n/a
39	CTCF	chr7:38672188-38672230	A549	lung:	n/a	n/a
40	CTCF	chr7:38672140-38672290	GM12869	blood:	n/a	n/a
41	RAD21	chr7:38672055-38672286	H1-hESC	embryonic stem cell:	n/a	n/a
42	CTCF	chr7:38672137-38672268	Fibrobl	skin:	n/a	n/a
43	CTCF	chr7:38672129-38672276	GM19238	blood:	n/a	n/a
44	CTCF	chr7:38671999-38672295	H1-hESC	embryonic stem cell:	n/a	n/a
45	CTCF	chr7:38672100-38672250	HRPEpiC	eye:	n/a	n/a
46	CTCF	chr7:38672136-38672263	GM19239	blood:	n/a	n/a
47	CTCF	chr7:38672160-38672310	HCT-116	colon:	n/a	n/a

No data

(count:1 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:38491211..38492331-chr7:38671592..38672516,5	MCF-7	breast:

No data

Variant related genes	Relation type
AMPH	TF binding region

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10267034	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12333355	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62442572	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62442575	0.80[AFR][1000 genomes]
rs62442577	0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932229	chr7:38248340-38727527	Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:38671400-38677600	Weak transcription	Right Atrium	heart
2	chr7:38671800-38673600	Weak transcription	Fetal Brain Female	brain

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