Variant report

Variant	rs62442662
Chromosome Location	chr6:160378955-160378956
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs62440863	1.00[ASN][1000 genomes]
rs62440864	1.00[ASN][1000 genomes]
rs62441224	1.00[ASN][1000 genomes]
rs8191811	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432970	chr6:160323589-160436589	Flanking Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv464087	chr6:160352497-160398330	Flanking Active TSS Enhancers Active TSS Weak transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
3	nsv604996	chr6:160352497-160398330	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
4	esv2758089	chr6:160372244-161234665	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
5	esv2759484	chr6:160372244-161234665	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:160372000-160384800	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr6:160374200-160381600	Weak transcription	Right Ventricle	heart
3	chr6:160374400-160380400	Weak transcription	Fetal Muscle Trunk	muscle
4	chr6:160375000-160380400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr6:160375000-160380400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr6:160375000-160380400	Weak transcription	Duodenum Mucosa	Duodenum
7	chr6:160375000-160380400	Weak transcription	Spleen	Spleen
8	chr6:160375000-160380600	Weak transcription	Right Atrium	heart
9	chr6:160375200-160380200	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr6:160375200-160380400	Weak transcription	Skeletal Muscle Male	skeletal muscle
11	chr6:160375200-160380600	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr6:160375400-160380400	Weak transcription	Placenta	Placenta
13	chr6:160376000-160380400	Weak transcription	Left Ventricle	heart
14	chr6:160377000-160379000	Weak transcription	Monocytes-CD14+_RO01746	blood
15	chr6:160377800-160379200	Enhancers	Primary neutrophils fromperipheralblood	blood
16	chr6:160378200-160380600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr6:160378400-160380400	Weak transcription	Adipose Nuclei	Adipose
18	chr6:160378600-160380400	Weak transcription	Fetal Muscle Leg	muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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