Variant report

Variant	rs62442877
Chromosome Location	chr6:120943622-120943623
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs62442956	1.00[EUR][1000 genomes]
rs62442959	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs62443009	0.81[EUR][1000 genomes]
rs62443010	0.81[EUR][1000 genomes]
rs62443011	0.81[EUR][1000 genomes]
rs62443013	0.81[EUR][1000 genomes]
rs62443014	0.81[EUR][1000 genomes]
rs62443015	0.81[EUR][1000 genomes]
rs62444861	0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2753290	chr6:120309301-120979301	Enhancers Weak transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
2	esv2752474	chr6:120309301-120982301	Enhancers ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS	TF binding region Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
3	nsv428495	chr6:120861159-120954224	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:120942000-120944200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
2	chr6:120943000-120943800	Enhancers	iPS-20b Cell Line	embryonic stem cell
3	chr6:120943200-120943800	Enhancers	HUES48 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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