Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:38204751..38208783-chr7:38210217..38214308,4	K562	blood:

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs1014136	0.91[ASN][1000 genomes]
rs10224886	0.87[ASN][1000 genomes]
rs10234310	0.91[ASN][1000 genomes]
rs10254082	0.91[ASN][1000 genomes]
rs10282163	0.91[ASN][1000 genomes]
rs10464362	0.99[ASN][1000 genomes]
rs11766931	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11773477	0.91[ASN][1000 genomes]
rs12669726	0.91[ASN][1000 genomes]
rs12670582	0.97[ASN][1000 genomes]
rs17410426	0.91[ASN][1000 genomes]
rs2270165	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2392540	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28664954	0.91[ASN][1000 genomes]
rs3778894	0.91[ASN][1000 genomes]
rs55915216	0.91[ASN][1000 genomes]
rs56147907	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs56228793	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs60713125	0.91[ASN][1000 genomes]
rs62443315	0.89[ASN][1000 genomes]
rs73128667	0.90[AMR][1000 genomes]
rs73128681	0.90[AMR][1000 genomes]
rs9638935	0.91[ASN][1000 genomes]
rs9639788	0.88[ASN][1000 genomes]
rs9986766	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016355	chr7:38168232-38372719	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
2	nsv830963	chr7:38172988-38344779	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	esv2762664	chr7:38201814-38228480	Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:38209800-38212200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
2	chr7:38210200-38217000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr7:38210200-38217000	Weak transcription	NH-A	brain
4	chr7:38210400-38217000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr7:38211200-38212400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr7:38211800-38212400	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr7:38211800-38217200	Weak transcription	Primary neutrophils fromperipheralblood	blood
8	chr7:38212000-38212400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr7:38212000-38212600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
10	chr7:38212000-38214400	ZNF genes & repeats	GM12878-XiMat	blood

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