Variant report

Variant	rs62443626
Chromosome Location	chr7:39056649-39056650
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:11)
CpG islands
(count:0)
Chromatin interactive
region (count:3)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:11 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	GATA3	chr7:39056139-39056658	T-47D	breast:	n/a	n/a
2	HDAC2	chr7:39056201-39056736	MCF-7	breast:	n/a	n/a
3	MAX	chr7:39056138-39056671	MCF-7	breast:	n/a	n/a
4	TEAD4	chr7:39056221-39056674	ECC-1	luminal epithelium:	n/a	n/a
5	GATA3	chr7:39055990-39056769	MCF-7	breast:	n/a	n/a
6	FOXA1	chr7:39056090-39057036	T-47D	breast:	n/a	n/a
7	TCF7L2	chr7:39056149-39056824	MCF-7	breast:	n/a	n/a
8	NR2F2	chr7:39056124-39056658	MCF-7	breast:	n/a	n/a
9	FOXA1	chr7:39056185-39056695	T-47D	breast:	n/a	n/a
10	GATA3	chr7:39056017-39056736	MCF-7	breast:	n/a	n/a
11	GATA3	chr7:39056100-39056669	T-47D	breast:	n/a	n/a

No data

(count:3 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:39052158..39055296-chr7:39055387..39058245,4	K562	blood:
2	chr7:39056516..39058385-chr7:39059051..39061295,2	K562	blood:
3	chr7:39053567..39055132-chr7:39055413..39056943,2	K562	blood:

No data

No data

No data

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10951588	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1116811	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12532009	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs34099272	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs59514011	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62442164	0.90[EUR][1000 genomes]
rs7779583	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7779853	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830967	chr7:38913837-39069253	Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1024142	chr7:38978728-39300444	Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv887967	chr7:39009307-39090698	Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	esv3409286	chr7:39054027-39056825	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:39054200-39057000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr7:39054200-39062000	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr7:39056200-39056800	Enhancers	Fetal Kidney	kidney
4	chr7:39056200-39057000	Active TSS	Pancreatic Islets	Pancreatic Islet
5	chr7:39056200-39058000	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr7:39056400-39056800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr7:39056400-39057200	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr7:39056400-39057400	Enhancers	Placenta	Placenta
9	chr7:39056400-39058000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr7:39056600-39057200	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr7:39056600-39057200	Enhancers	Placenta Amnion	Placenta Amnion

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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