Variant report

Variant	rs62444600
Chromosome Location	chr7:14425332-14425333
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10247193	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4721317	1.00[ASN][1000 genomes]
rs62444572	1.00[AMR][1000 genomes]
rs62444579	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs62444595	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62444597	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62444599	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62445620	1.00[ASN][1000 genomes]
rs73052171	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949033	chr7:14086106-14860323	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv606281	chr7:14388381-14443963	Weak transcription Flanking Active TSS Enhancers Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:14418600-14428400	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr7:14421800-14425400	Weak transcription	HSMM	muscle
3	chr7:14422000-14425600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr7:14424400-14425400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr7:14424400-14426200	Enhancers	Muscle Satellite Cultured Cells	--
6	chr7:14424400-14426400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr7:14424400-14426400	Enhancers	NHEK	skin
8	chr7:14425200-14425400	Enhancers	Pancreatic Islets	Pancreatic Islet

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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