Variant report

Variant	rs62445920
Chromosome Location	chr7:21949740-21949741
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr7:21949485-21950064	Hela-S3	cervix:	n/a	n/a

Variant related genes	Relation type
CDCA7L	TF binding region

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs10238697	0.86[ASN][1000 genomes]
rs73281732	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018133	chr7:21740118-22055283	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv830922	chr7:21793386-21964675	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	3 gene(s)	inside rSNPs	diseases
3	nsv1027453	chr7:21918474-21982448	Enhancers Flanking Active TSS Genic enhancers Strong transcription Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:111 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:21932600-21951000	Weak transcription	HSMM	muscle
2	chr7:21933000-21963200	Weak transcription	A549	lung
3	chr7:21934000-21950400	Strong transcription	Cortex derived primary cultured neurospheres	brain
4	chr7:21934200-21951600	Weak transcription	Fetal Brain Male	brain
5	chr7:21936600-21956400	Strong transcription	HUES64 Cell Line	embryonic stem cell
6	chr7:21936600-21956600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
7	chr7:21937000-21952200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr7:21937000-21956400	Strong transcription	HUES48 Cell Line	embryonic stem cell
9	chr7:21937200-21956600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
10	chr7:21937400-21950800	Weak transcription	Right Atrium	heart
11	chr7:21937400-21956000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr7:21937600-21952000	Weak transcription	Psoas Muscle	Psoas
13	chr7:21937600-21952800	Strong transcription	Thymus	Thymus
14	chr7:21937600-21956200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr7:21937600-21956400	Strong transcription	HUES6 Cell Line	embryonic stem cell
16	chr7:21937800-21950200	Strong transcription	Fetal Muscle Trunk	muscle
17	chr7:21937800-21950600	Strong transcription	Fetal Stomach	stomach
18	chr7:21937800-21954000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr7:21937800-21956000	Strong transcription	H1 Cell Line	embryonic stem cell
20	chr7:21937800-21956200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
21	chr7:21938000-21955000	Weak transcription	Stomach Mucosa	stomach
22	chr7:21938000-21956200	Strong transcription	H9 Cell Line	embryonic stem cell
23	chr7:21938200-21950000	Weak transcription	Small Intestine	intestine
24	chr7:21938400-21950200	Strong transcription	Ovary	ovary
25	chr7:21938600-21950600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
26	chr7:21938600-21984000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
27	chr7:21938800-21952200	Strong transcription	Primary B cells from cord blood	blood
28	chr7:21938800-21952200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
29	chr7:21938800-21953200	Strong transcription	Fetal Thymus	thymus
30	chr7:21938800-21956600	Strong transcription	Primary T cells from cord blood	blood
31	chr7:21939000-21952000	Strong transcription	Primary B cells from peripheral blood	blood
32	chr7:21939400-21951800	Strong transcription	Primary hematopoietic stem cells	blood
33	chr7:21939400-21952200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr7:21939400-21952200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
35	chr7:21940200-21950200	Strong transcription	Rectal Mucosa Donor 29	rectum
36	chr7:21940200-21952200	Strong transcription	Primary neutrophils fromperipheralblood	blood
37	chr7:21942000-21955400	Strong transcription	iPS-15b Cell Line	embryonic stem cell
38	chr7:21942200-21950400	Strong transcription	Fetal Lung	lung
39	chr7:21942400-21957200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr7:21943000-21955000	Weak transcription	Fetal Kidney	kidney
41	chr7:21943400-21952000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr7:21943800-21950000	Weak transcription	Fetal Brain Female	brain
43	chr7:21944000-21951000	Weak transcription	Brain Angular Gyrus	brain
44	chr7:21944000-21951200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
45	chr7:21944000-21954800	Weak transcription	NH-A	brain
46	chr7:21944000-21957400	Weak transcription	Colonic Mucosa	Colon
47	chr7:21944200-21953200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
48	chr7:21944200-21956200	Weak transcription	Spleen	Spleen
49	chr7:21944400-21956600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
50	chr7:21945800-21950000	Weak transcription	Muscle Satellite Cultured Cells	--

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