Variant report

Variant	rs62447179
Chromosome Location	chr7:50339609-50339610
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10269380	0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs11761922	0.80[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs11765436	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17732497	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1993444	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs28625973	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4917017	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs55957767	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6583437	0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs7781977	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7782210	0.81[ASN][1000 genomes]
rs7791218	0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs7805434	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9886239	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv464444	chr7:49671882-50454736	Enhancers Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv606897	chr7:49671883-50454736	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv498090	chr7:49708644-50427714	Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Weak transcription Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv1020869	chr7:49712860-50457544	Enhancers Active TSS Flanking Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
5	nsv1024102	chr7:50195864-50418159	Genic enhancers Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:50325000-50340000	Weak transcription	Thymus	Thymus
2	chr7:50325800-50343000	Weak transcription	K562	blood
3	chr7:50339000-50342600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
4	chr7:50339000-50343000	Enhancers	Primary T killer memory cells from peripheral blood	blood
5	chr7:50339200-50340800	Enhancers	Dnd41	blood
6	chr7:50339200-50342400	Enhancers	Primary T cells from cord blood	blood
7	chr7:50339200-50342600	Enhancers	Primary T helper cells fromperipheralblood	blood
8	chr7:50339200-50342800	Enhancers	Primary T helper naive cells from peripheral blood	blood
9	chr7:50339200-50343000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
10	chr7:50339200-50343000	Enhancers	Fetal Thymus	thymus
11	chr7:50339400-50339800	Enhancers	Primary T helper cells PMA-I stimulated	--
12	chr7:50339400-50340400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
13	chr7:50339400-50342600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
14	chr7:50339600-50342800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links