Variant report

Variant	rs62452784
Chromosome Location	chr7:14055798-14055799
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:14050366..14053486-chr7:14054872..14056927,3	K562	blood:

Variant related genes	Relation type
ENSG00000252374	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10950502	1.00[ASN][1000 genomes]
rs11768508	0.87[ASN][1000 genomes]
rs11772295	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12154297	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12154307	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12154599	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17167735	1.00[ASN][1000 genomes]
rs17167741	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17167742	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17167773	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17167791	0.87[ASN][1000 genomes]
rs62452785	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62452786	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62452787	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62452788	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62452792	0.87[ASN][1000 genomes]
rs62452794	0.87[ASN][1000 genomes]
rs62452795	0.87[ASN][1000 genomes]
rs62452797	0.87[ASN][1000 genomes]
rs62452798	0.87[ASN][1000 genomes]
rs62454649	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62454651	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73054156	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73057914	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73057927	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019873	chr7:13707148-14133367	Bivalent Enhancer Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv887698	chr7:13841798-14056075	Enhancers Genic enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv949467	chr7:13938464-14279074	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1030645	chr7:14015533-14078153	Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv538739	chr7:14015533-14078153	Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	esv3349837	chr7:14053527-14057025	Enhancers Weak transcription	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	esv3400601	chr7:14053977-14056875	Weak transcription Enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:14050200-14070800	Weak transcription	K562	blood
2	chr7:14054400-14059800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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