Variant report

Variant	rs62454249
Chromosome Location	chr7:26995287-26995288
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10227553	0.91[ASN][1000 genomes]
rs10238645	0.81[ASN][1000 genomes]
rs10244751	0.86[ASN][1000 genomes]
rs12530718	0.91[ASN][1000 genomes]
rs12534901	0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12534912	0.88[ASN][1000 genomes]
rs17377696	0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17436410	0.91[ASN][1000 genomes]
rs17471061	0.88[ASN][1000 genomes]
rs17471088	0.88[ASN][1000 genomes]
rs2253415	0.86[ASN][1000 genomes]
rs2264802	0.88[ASN][1000 genomes]
rs2264803	0.81[ASN][1000 genomes]
rs2462900	0.80[ASN][1000 genomes]
rs2462904	0.91[ASN][1000 genomes]
rs2462910	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2465271	0.91[ASN][1000 genomes]
rs2648076	0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2693662	0.91[ASN][1000 genomes]
rs2693665	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2693668	0.88[ASN][1000 genomes]
rs2712238	0.85[ASN][1000 genomes]
rs2712242	0.91[ASN][1000 genomes]
rs2712244	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2712245	0.91[ASN][1000 genomes]
rs2712246	0.85[ASN][1000 genomes]
rs55889667	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025538	chr7:26482342-27376045	Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	213 gene(s)	inside rSNPs	diseases
2	nsv538805	chr7:26482342-27376045	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	213 gene(s)	inside rSNPs	diseases
3	nsv1033272	chr7:26976426-27020206	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv1018709	chr7:26990384-27216552	Bivalent Enhancer Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	140 gene(s)	inside rSNPs	diseases
5	nsv538806	chr7:26990384-27216552	Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Genic enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	140 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:26991200-26998000	Weak transcription	NHDF-Ad	bronchial
2	chr7:26991600-26999200	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr7:26995000-26995400	Enhancers	Fetal Kidney	kidney
4	chr7:26995000-26995400	Enhancers	Fetal Lung	lung

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