Variant report

Variant	rs62456625
Chromosome Location	chr7:55970418-55970419
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2829874	chr7:55382925-56369816	Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Weak transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	98 gene(s)	inside rSNPs	diseases
2	nsv995105	chr7:55606107-56174888	Active TSS ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
3	esv12412	chr7:55619800-56385412	Strong transcription Flanking Active TSS Genic enhancers Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
4	nsv427782	chr7:55703073-56010314	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
5	nsv949574	chr7:55705566-56544711	Active TSS Weak transcription Strong transcription Genic enhancers Enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	84 gene(s)	inside rSNPs	diseases
6	nsv1019400	chr7:55709827-56094540	Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
7	esv3446617	chr7:55745934-56485903	Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	81 gene(s)	inside rSNPs	diseases
8	nsv529162	chr7:55800753-56174888	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
9	esv2761334	chr7:55823581-56424739	Weak transcription Flanking Active TSS Active TSS Strong transcription Enhancers Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
10	nsv888064	chr7:55831721-56104539	Genic enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
11	nsv1018806	chr7:55844931-56383936	Active TSS Enhancers Genic enhancers Flanking Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	68 gene(s)	inside rSNPs	diseases
12	nsv538860	chr7:55844931-56383936	Enhancers Active TSS Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	68 gene(s)	inside rSNPs	diseases
13	nsv498114	chr7:55872850-56174888	Weak transcription Active TSS Enhancers Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
14	nsv1034826	chr7:55962159-56092835	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
15	nsv1033225	chr7:55962159-56094540	Genic enhancers Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
16	esv3419807	chr7:55969758-55974056	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:64 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:55955400-56004200	Weak transcription	Gastric	stomach
2	chr7:55955800-55973800	Weak transcription	Left Ventricle	heart
3	chr7:55955800-55975000	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr7:55955800-55985800	Weak transcription	Esophagus	oesophagus
5	chr7:55956000-55974200	Weak transcription	Aorta	Aorta
6	chr7:55956000-55979600	Weak transcription	Psoas Muscle	Psoas
7	chr7:55956200-55973800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
8	chr7:55956200-55974000	Weak transcription	Ovary	ovary
9	chr7:55956200-55974200	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr7:55956200-55975200	Weak transcription	HSMMtube	muscle
11	chr7:55956200-55979400	Weak transcription	Primary T cells from cord blood	blood
12	chr7:55956200-55979600	Weak transcription	Rectal Mucosa Donor 31	rectum
13	chr7:55956200-55990800	Weak transcription	Thymus	Thymus
14	chr7:55956200-56002200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr7:55956400-55973800	Weak transcription	Brain Inferior Temporal Lobe	brain
16	chr7:55956400-55974400	Weak transcription	Adipose Nuclei	Adipose
17	chr7:55956400-55974800	Weak transcription	Fetal Kidney	kidney
18	chr7:55956400-55975000	Weak transcription	Liver	Liver
19	chr7:55956400-55979000	Weak transcription	Brain Substantia Nigra	brain
20	chr7:55956400-55979600	Weak transcription	Brain Angular Gyrus	brain
21	chr7:55956400-55979800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
22	chr7:55956400-55990600	Weak transcription	Brain Anterior Caudate	brain
23	chr7:55956400-55995800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr7:55956400-55998800	Weak transcription	Colon Smooth Muscle	Colon
25	chr7:55956600-55974600	Weak transcription	Fetal Brain Male	brain
26	chr7:55956600-55979400	Weak transcription	Skeletal Muscle Male	skeletal muscle
27	chr7:55956600-55990800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr7:55961800-55979400	Weak transcription	Spleen	Spleen
29	chr7:55962000-55974000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
30	chr7:55962000-55990000	Weak transcription	HepG2	liver
31	chr7:55962000-55992800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
32	chr7:55962400-55974600	Weak transcription	Duodenum Smooth Muscle	Duodenum
33	chr7:55962600-55977800	Weak transcription	Fetal Heart	heart
34	chr7:55964600-55974600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
35	chr7:55966000-55974200	Weak transcription	Brain Hippocampus Middle	brain
36	chr7:55966400-55973000	Weak transcription	Fetal Lung	lung
37	chr7:55966400-55974000	Weak transcription	Fetal Muscle Trunk	muscle
38	chr7:55966400-55974000	Weak transcription	Fetal Muscle Leg	muscle
39	chr7:55966600-55983800	Weak transcription	HUVEC	blood vessel
40	chr7:55966800-55979600	Weak transcription	Rectal Mucosa Donor 29	rectum
41	chr7:55967600-55995800	Weak transcription	Skeletal Muscle Female	skeletal muscle
42	chr7:55968000-55975200	Weak transcription	Duodenum Mucosa	Duodenum
43	chr7:55968200-55975200	Weak transcription	Fetal Intestine Small	intestine
44	chr7:55968400-55974000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
45	chr7:55968600-55971600	Strong transcription	Fetal Stomach	stomach
46	chr7:55968600-55995000	Weak transcription	HSMM	muscle
47	chr7:55968800-55970600	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
48	chr7:55969000-55974400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
49	chr7:55969000-55975000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
50	chr7:55969000-55985600	Weak transcription	Dnd41	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links