Variant report

Variant	rs62459885
Chromosome Location	chr7:85379616-85379617
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:85373526..85376335-chr7:85378810..85381383,2	K562	blood:
2	chr7:85183273..85184394-chr7:85379037..85380205,4	MCF-7	breast:
3	chr7:84670634..84671600-chr7:85379520..85380121,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000153993	Chromatin interaction

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11970822	0.89[ASN][1000 genomes]
rs11970900	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12668483	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12670014	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12673856	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17160206	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17160212	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs58398859	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58552884	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61055403	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62459882	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62459884	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62459894	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62459898	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62459900	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62459914	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62459920	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62459921	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62459923	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62462227	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6943759	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6947997	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6953730	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6954380	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7811306	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916645	chr7:84678606-85420011	Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv869255	chr7:84678606-85444155	Enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv888653	chr7:85165289-85381614	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv888655	chr7:85178080-85566769	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv888660	chr7:85187214-85444989	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv888661	chr7:85187214-85458197	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv888664	chr7:85194414-85381614	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv888665	chr7:85194414-85582101	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv888669	chr7:85303815-85381614	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
10	nsv888670	chr7:85303815-85458197	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
11	nsv888671	chr7:85343307-85570519	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
12	nsv831052	chr7:85366532-85506903	Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:85378800-85379800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr7:85378800-85380200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr7:85379200-85380200	Enhancers	H1 Cell Line	embryonic stem cell
4	chr7:85379200-85380200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr7:85379400-85379800	Enhancers	H9 Cell Line	embryonic stem cell
6	chr7:85379400-85380200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr7:85379400-85380200	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr7:85379400-85380200	Enhancers	Gastric	stomach
9	chr7:85379600-85379800	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
10	chr7:85379600-85379800	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
11	chr7:85379600-85379800	Enhancers	Brain Anterior Caudate	brain
12	chr7:85379600-85380000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr7:85379600-85380200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
14	chr7:85379600-85380200	Enhancers	iPS-18 Cell Line	embryonic stem cell
15	chr7:85379600-85380200	Enhancers	Pancreas	Pancrea

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