Variant report

Variant	rs62460166
Chromosome Location	chr7:58053551-58053552
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs2083088	0.87[AMR][1000 genomes]
rs2196625	0.82[AMR][1000 genomes]
rs34440380	0.83[EUR][1000 genomes]
rs35196040	0.81[EUR][1000 genomes]
rs35358987	0.84[EUR][1000 genomes]
rs35362120	0.84[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv607106	chr7:57923927-58054092	ZNF genes & repeats Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	esv13519	chr7:57940278-58054218	Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv821066	chr7:57940278-58054218	ZNF genes & repeats Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv607108	chr7:57940293-58054092	ZNF genes & repeats Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv3431035	chr7:58025210-58054331	ZNF genes & repeats Active TSS Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
6	esv3382127	chr7:58025310-58054331	Weak transcription ZNF genes & repeats Enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
7	esv3358367	chr7:58031010-58054331	ZNF genes & repeats Weak transcription Enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
8	esv3396721	chr7:58031010-58054331	ZNF genes & repeats Enhancers Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
9	esv3387478	chr7:58048110-58054208	ZNF genes & repeats Enhancers Weak transcription Active TSS	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:58044800-58054200	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
2	chr7:58044800-58054400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr7:58044800-58054400	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
4	chr7:58045000-58054200	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
5	chr7:58052800-58054200	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
6	chr7:58052800-58054400	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
7	chr7:58053200-58054400	ZNF genes & repeats	Fetal Heart	heart
8	chr7:58053200-58054400	ZNF genes & repeats	Gastric	stomach

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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