Variant report

Variant	rs62461720
Chromosome Location	chr7:64125773-64125774
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MXI1	chr7:64125773-64128637	SK-N-SH	brain:	n/a	n/a

Variant related genes	Relation type
ZNF107	TF binding region

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10276515	0.90[ASN][1000 genomes]
rs17138801	0.85[AMR][1000 genomes]
rs17779194	0.89[AMR][1000 genomes]
rs17779236	0.85[AMR][1000 genomes]
rs55990963	0.90[ASN][1000 genomes]
rs61739917	0.91[ASN][1000 genomes]
rs62455806	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62455807	0.89[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs62455812	0.94[ASN][1000 genomes]
rs62455820	0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs62455822	0.82[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs62455823	0.90[ASN][1000 genomes]
rs62455845	0.91[ASN][1000 genomes]
rs62455846	0.91[ASN][1000 genomes]
rs62455848	0.90[ASN][1000 genomes]
rs62460663	0.96[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs62460664	0.96[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs62460665	0.96[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs62460667	0.96[AMR][1000 genomes]
rs62460668	0.96[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62460669	0.96[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62460670	0.96[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs62460673	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62461557	0.82[AMR][1000 genomes]
rs62461559	0.85[AMR][1000 genomes]
rs62461716	0.96[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62461717	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs62461722	0.96[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62462860	0.85[AMR][1000 genomes]
rs62462863	0.85[AMR][1000 genomes]
rs62462864	0.85[AMR][1000 genomes]
rs62462865	0.85[AMR][1000 genomes]
rs62462867	0.85[AMR][1000 genomes]
rs62462868	0.85[AMR][1000 genomes]
rs62462869	0.85[AMR][1000 genomes]
rs62462870	0.85[AMR][1000 genomes]
rs62462874	0.89[AMR][1000 genomes]
rs62462875	0.89[AMR][1000 genomes]
rs62462876	0.89[AMR][1000 genomes]
rs62462877	0.89[AMR][1000 genomes]
rs62462912	0.85[AMR][1000 genomes]
rs62462915	0.96[AMR][1000 genomes]
rs62462916	0.96[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:20 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2422405	chr7:63709739-64632341	Enhancers Bivalent Enhancer Active TSS Weak transcription ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
2	nsv427787	chr7:63741770-64419520	Weak transcription Strong transcription Bivalent Enhancer Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
3	esv2764000	chr7:63766980-64275251	Flanking Active TSS Weak transcription ZNF genes & repeats Enhancers Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	33 gene(s)	inside rSNPs	diseases
4	esv2755057	chr7:63819849-64345822	Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	32 gene(s)	inside rSNPs	diseases
5	nsv1031703	chr7:63839601-64225952	Active TSS Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases
6	nsv464518	chr7:63881238-64506904	Enhancers ZNF genes & repeats Bivalent/Poised TSS Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
7	nsv607312	chr7:63881238-64506904	Active TSS Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
8	nsv888271	chr7:63961212-64295884	Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	21 gene(s)	inside rSNPs	diseases
9	nsv888273	chr7:63990100-64291622	Weak transcription ZNF genes & repeats Enhancers Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
10	nsv888274	chr7:63990100-64331123	Strong transcription ZNF genes & repeats Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	25 gene(s)	inside rSNPs	diseases
11	nsv888275	chr7:63990100-64468590	Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
12	nsv888276	chr7:63990100-64511564	Strong transcription ZNF genes & repeats Weak transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
13	nsv1021893	chr7:63995601-64155027	Flanking Active TSS Enhancers Bivalent/Poised TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
14	nsv538892	chr7:63995601-64155027	ZNF genes & repeats Enhancers Active TSS Weak transcription Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
15	nsv888278	chr7:64048473-64139463	Enhancers Genic enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
16	esv3521185	chr7:64048921-64136654	Weak transcription Strong transcription Active TSS ZNF genes & repeats Genic enhancers Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
17	esv3521187	chr7:64048921-64136654	Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
18	esv16290	chr7:64058602-64162829	Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
19	nsv1027615	chr7:64065943-64138253	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
20	nsv888279	chr7:64094285-64331123	Strong transcription ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:64124400-64126000	Enhancers	Primary T killer memory cells from peripheral blood	blood
2	chr7:64125200-64125800	Enhancers	Primary T cells fromperipheralblood	blood
3	chr7:64125200-64126000	Enhancers	Primary B cells from cord blood	blood
4	chr7:64125400-64125800	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
5	chr7:64125400-64125800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
6	chr7:64125400-64125800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
7	chr7:64125400-64125800	Enhancers	Brain Angular Gyrus	brain
8	chr7:64125400-64125800	Enhancers	Brain Cingulate Gyrus	brain
9	chr7:64125400-64125800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
10	chr7:64125400-64125800	Enhancers	Duodenum Smooth Muscle	Duodenum
11	chr7:64125400-64125800	Enhancers	Psoas Muscle	Psoas
12	chr7:64125400-64125800	Enhancers	Rectal Mucosa Donor 31	rectum
13	chr7:64125400-64125800	Enhancers	Right Atrium	heart
14	chr7:64125400-64125800	Enhancers	Right Ventricle	heart
15	chr7:64125400-64125800	Enhancers	Stomach Smooth Muscle	stomach
16	chr7:64125400-64125800	Flanking Active TSS	Dnd41	blood
17	chr7:64125400-64126000	Enhancers	Primary monocytes fromperipheralblood	blood
18	chr7:64125400-64126000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr7:64125400-64126200	Enhancers	Primary neutrophils fromperipheralblood	blood
20	chr7:64125400-64126200	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
21	chr7:64125400-64126400	Active TSS	Primary mononuclear cells fromperipheralblood	Blood
22	chr7:64125400-64126600	Active TSS	Skeletal Muscle Female	skeletal muscle
23	chr7:64125400-64126800	Active TSS	Adipose Nuclei	Adipose
24	chr7:64125400-64126800	Active TSS	Skeletal Muscle Male	skeletal muscle
25	chr7:64125400-64127000	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr7:64125400-64127000	Active TSS	Rectal Mucosa Donor 29	rectum
27	chr7:64125400-64127200	Active TSS	Breast Myoepithelial Primary Cells	Breast
28	chr7:64125400-64127200	Active TSS	Primary hematopoietic stem cells short term culture	blood
29	chr7:64125400-64127200	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
30	chr7:64125400-64127200	Active TSS	Left Ventricle	heart
31	chr7:64125400-64127200	Active TSS	Ovary	ovary
32	chr7:64125400-64127400	Active TSS	Primary T cells from cord blood	blood
33	chr7:64125400-64127400	Active TSS	Rectal Smooth Muscle	rectum
34	chr7:64125600-64126000	Flanking Active TSS	Primary B cells from peripheral blood	blood
35	chr7:64125600-64126000	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
36	chr7:64125600-64126000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
37	chr7:64125600-64126000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
38	chr7:64125600-64126400	Active TSS	Primary T regulatory cells fromperipheralblood	blood
39	chr7:64125600-64127400	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr7:64125600-64127400	Active TSS	Primary T helper naive cells from peripheral blood	blood
41	chr7:64125600-64127400	Active TSS	Primary T killer naive cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links