Variant report

Variant	rs62465047
Chromosome Location	chr7:66739323-66739324
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-STAG3L4-5	chr7:66738714-66739487	NONHSAT121267
2	lnc-STAG3L4-5	chr7:66738714-66739487	FPKM1_group_29835_transcript_4

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs12539705	0.88[ASN][1000 genomes]
rs17144570	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs4717359	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs62465002	0.81[AMR][1000 genomes]
rs62465037	0.88[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs62465038	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs62465040	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs62465044	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758118	chr7:66401430-66859253	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	esv2759535	chr7:66401430-66859253	Weak transcription Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
3	nsv888330	chr7:66502171-66877880	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	39 gene(s)	inside rSNPs	diseases
4	nsv1032237	chr7:66644492-66785029	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
5	nsv970518	chr7:66647675-66742783	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv1027702	chr7:66722103-66841913	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
7	nsv1031048	chr7:66722103-66844039	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
8	nsv8129	chr7:66735416-66766669	Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	esv13926	chr7:66735980-66767830	Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3' Enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:66694800-66766600	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr7:66701600-66766600	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr7:66717400-66766200	Weak transcription	Fetal Muscle Leg	muscle
4	chr7:66717400-66766400	Weak transcription	Stomach Smooth Muscle	stomach
5	chr7:66717600-66756200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr7:66717800-66766400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr7:66719000-66766400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr7:66719800-66766200	Weak transcription	Spleen	Spleen
9	chr7:66721800-66756000	Weak transcription	Fetal Intestine Small	intestine
10	chr7:66722400-66740600	Weak transcription	Primary T cells from cord blood	blood
11	chr7:66723800-66766400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr7:66725800-66766200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
13	chr7:66725800-66766400	Weak transcription	Adipose Nuclei	Adipose
14	chr7:66727600-66749600	Weak transcription	Aorta	Aorta
15	chr7:66727600-66766200	Weak transcription	Primary T helper cells fromperipheralblood	blood
16	chr7:66728600-66766600	Weak transcription	Brain Angular Gyrus	brain
17	chr7:66729000-66767000	Weak transcription	Gastric	stomach
18	chr7:66733200-66749800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr7:66733200-66766600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr7:66733400-66766800	Weak transcription	Lung	lung
21	chr7:66733800-66750200	Weak transcription	Fetal Stomach	stomach
22	chr7:66736400-66766600	Weak transcription	Brain Substantia Nigra	brain

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