Variant report

Variant	rs62468567
Chromosome Location	chr7:78145889-78145890
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs12705530	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12705545	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62467103	0.81[AMR][1000 genomes]
rs62467106	0.81[AMR][1000 genomes]
rs62467107	0.81[AMR][1000 genomes]
rs62467109	0.81[AMR][1000 genomes]
rs62467115	0.81[AMR][1000 genomes]
rs62467124	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62468560	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62468561	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62468564	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62468572	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62468574	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62468575	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62468576	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62468580	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62468581	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62468583	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62468584	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022764	chr7:77911072-78316607	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1022199	chr7:78054639-78469370	Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv538986	chr7:78054639-78469370	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv607655	chr7:78134864-78148980	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:78128800-78158400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr7:78138400-78161800	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr7:78144200-78160000	Weak transcription	Brain Hippocampus Middle	brain
4	chr7:78144400-78146000	Weak transcription	Brain Anterior Caudate	brain
5	chr7:78144400-78151600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr7:78144400-78156400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr7:78144400-78158200	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr7:78144400-78158600	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr7:78144600-78146200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr7:78144600-78147800	Weak transcription	Brain Germinal Matrix	brain
11	chr7:78145600-78146000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr7:78145600-78146000	Enhancers	HUES6 Cell Line	embryonic stem cell
13	chr7:78145600-78146000	ZNF genes & repeats	Ovary	ovary
14	chr7:78145600-78146200	Enhancers	ES-I3 Cell Line	embryonic stem cell
15	chr7:78145600-78146200	Enhancers	H9 Cell Line	embryonic stem cell
16	chr7:78145600-78146200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr7:78145800-78146000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr7:78145800-78146200	Enhancers	HUES48 Cell Line	embryonic stem cell
19	chr7:78145800-78146200	Enhancers	iPS-20b Cell Line	embryonic stem cell
20	chr7:78145800-78146600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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