Variant report

Variant	rs62473156
Chromosome Location	chr7:111985800-111985801
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:111982916..111985880-chr7:111989635..111992335,2	K562	blood:
2	chr7:111977500..111980295-chr7:111984843..111986520,2	K562	blood:

Variant related genes	Relation type
ENSG00000226851	Chromatin interaction
ENSG00000198839	Chromatin interaction

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs2006275	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2016864	1.00[EUR][1000 genomes]
rs2396531	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2396532	0.96[EUR][1000 genomes]
rs4425678	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62473127	0.83[EUR][1000 genomes]
rs62473129	0.91[EUR][1000 genomes]
rs62473137	0.91[EUR][1000 genomes]
rs62473139	0.92[EUR][1000 genomes]
rs62473141	0.87[EUR][1000 genomes]
rs62473143	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62473145	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62473146	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62473147	1.00[EUR][1000 genomes]
rs62473148	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62473149	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62473150	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62473152	1.00[EUR][1000 genomes]
rs62473153	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62473154	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62473157	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62473960	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62474000	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62474001	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62474003	1.00[EUR][1000 genomes]
rs62474007	1.00[EUR][1000 genomes]
rs62474009	1.00[EUR][1000 genomes]
rs62474010	0.91[EUR][1000 genomes]
rs62474011	1.00[EUR][1000 genomes]
rs62474012	1.00[EUR][1000 genomes]
rs62474014	1.00[EUR][1000 genomes]
rs6960155	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6971079	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs736760	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs739746	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532335	chr7:111411990-112054905	Enhancers Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv531436	chr7:111856171-112585407	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	105 gene(s)	inside rSNPs	diseases
3	nsv1020212	chr7:111944370-112032596	Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Enhancers Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv5902	chr7:111952128-111997265	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	n/a
5	esv2762697	chr7:111983278-111988953	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:103 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:111945200-111986800	Weak transcription	Hela-S3	cervix
2	chr7:111958800-111987400	Weak transcription	Colon Smooth Muscle	Colon
3	chr7:111960800-111990000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
4	chr7:111961000-111987000	Weak transcription	Small Intestine	intestine
5	chr7:111961800-111986000	Weak transcription	K562	blood
6	chr7:111963800-111987200	Weak transcription	Rectal Smooth Muscle	rectum
7	chr7:111965800-111986800	Weak transcription	GM12878-XiMat	blood
8	chr7:111966000-111985800	Weak transcription	Spleen	Spleen
9	chr7:111966000-111989600	Weak transcription	Gastric	stomach
10	chr7:111966400-111991400	Weak transcription	Esophagus	oesophagus
11	chr7:111966600-111989600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr7:111966600-112000800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr7:111967600-111986800	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr7:111977600-111991000	Weak transcription	Cortex derived primary cultured neurospheres	brain
15	chr7:111977800-111986800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
16	chr7:111978200-111986000	Strong transcription	Left Ventricle	heart
17	chr7:111978400-111987800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr7:111978400-111989000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
19	chr7:111978400-111990400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
20	chr7:111978400-111990400	Weak transcription	Brain Germinal Matrix	brain
21	chr7:111978600-111986600	Weak transcription	Lung	lung
22	chr7:111978600-111990400	Weak transcription	H9 Cell Line	embryonic stem cell
23	chr7:111979400-111985800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
24	chr7:111979800-111986000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr7:111980200-111985800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr7:111980200-111986000	Strong transcription	Skeletal Muscle Female	skeletal muscle
27	chr7:111980800-111991400	Weak transcription	NHDF-Ad	bronchial
28	chr7:111981800-111987400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
29	chr7:111982000-111991400	Weak transcription	Fetal Muscle Leg	muscle
30	chr7:111982400-111989200	Weak transcription	Fetal Stomach	stomach
31	chr7:111982600-111986800	Weak transcription	Brain Substantia Nigra	brain
32	chr7:111982600-111990800	Weak transcription	Fetal Brain Female	brain
33	chr7:111982800-111987200	Weak transcription	NHEK	skin
34	chr7:111982800-111997000	Weak transcription	HepG2	liver
35	chr7:111983400-111986800	Weak transcription	Fetal Kidney	kidney
36	chr7:111983600-111991400	Weak transcription	Osteobl	bone
37	chr7:111983800-111986200	Weak transcription	Primary T helper cells PMA-I stimulated	--
38	chr7:111983800-111986800	Weak transcription	Fetal Thymus	thymus
39	chr7:111983800-111987000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
40	chr7:111983800-111987000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
41	chr7:111983800-111987000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
42	chr7:111983800-111987400	Weak transcription	Stomach Smooth Muscle	stomach
43	chr7:111983800-111988400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
44	chr7:111983800-111991000	Weak transcription	HSMM	muscle
45	chr7:111983800-111991200	Weak transcription	Brain Anterior Caudate	brain
46	chr7:111983800-111991400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
47	chr7:111983800-111993200	Weak transcription	Fetal Heart	heart
48	chr7:111983800-112004600	Weak transcription	Pancreas	Pancrea
49	chr7:111984000-111986800	Weak transcription	Brain Hippocampus Middle	brain
50	chr7:111984000-111986800	Weak transcription	Thymus	Thymus

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links