Variant report

Variant	rs62473889
Chromosome Location	chr7:83586216-83586217
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs12154732	0.96[AFR][1000 genomes]
rs12155350	0.96[AFR][1000 genomes]
rs41453047	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs55635951	0.92[EUR][1000 genomes]
rs62473886	0.96[AFR][1000 genomes]
rs62473890	0.81[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs62473897	0.96[AFR][1000 genomes]
rs62473903	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62473917	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6955283	0.96[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv607707	chr7:83381032-83646816	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv888620	chr7:83459908-83593805	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv888622	chr7:83526743-83631376	Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv1020784	chr7:83577402-83687108	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:83579200-83590400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr7:83581800-83588000	Weak transcription	Colon Smooth Muscle	Colon
3	chr7:83584600-83593000	Weak transcription	NHLF	lung
4	chr7:83584800-83588600	Weak transcription	NHDF-Ad	bronchial
5	chr7:83585000-83590200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr7:83585400-83586400	Weak transcription	Fetal Lung	lung
7	chr7:83585600-83587400	Weak transcription	Fetal Brain Male	brain
8	chr7:83585600-83597800	Weak transcription	Gastric	stomach
9	chr7:83586000-83588000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr7:83586000-83590600	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr7:83586200-83586400	Active TSS	iPS-20b Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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