Variant report

Variant	rs62474494
Chromosome Location	chr7:84475681-84475682
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:84474585..84476459-chr7:84497349..84500162,2	K562	blood:
2	chr7:84465946..84467768-chr7:84474017..84476802,2	K562	blood:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10224730	0.82[ASN][1000 genomes]
rs10227116	0.82[ASN][1000 genomes]
rs10229754	0.82[ASN][1000 genomes]
rs10240021	0.82[ASN][1000 genomes]
rs10272662	0.80[ASN][1000 genomes]
rs1030540	0.82[ASN][1000 genomes]
rs10499882	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11984418	0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs12538302	0.82[ASN][1000 genomes]
rs12707682	0.80[ASN][1000 genomes]
rs12707683	0.80[ASN][1000 genomes]
rs13227983	0.80[ASN][1000 genomes]
rs1583136	0.80[ASN][1000 genomes]
rs1583137	0.80[ASN][1000 genomes]
rs1594393	0.85[ASN][1000 genomes]
rs1897158	0.85[ASN][1000 genomes]
rs1919285	0.81[ASN][1000 genomes]
rs2141416	0.81[ASN][1000 genomes]
rs34107456	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34516090	0.81[ASN][1000 genomes]
rs35508218	0.80[ASN][1000 genomes]
rs35715078	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35895941	0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35992683	0.80[ASN][1000 genomes]
rs4301393	0.85[ASN][1000 genomes]
rs62474471	0.82[ASN][1000 genomes]
rs6946368	0.85[ASN][1000 genomes]
rs6972054	0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7458400	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7803475	0.80[ASN][1000 genomes]
rs9649677	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529344	chr7:83714286-84592857	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv949446	chr7:84003501-84763823	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv831049	chr7:84277599-84475710	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	esv34238	chr7:84279023-84591966	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv831050	chr7:84355996-84527261	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:84467200-84476800	Weak transcription	K562	blood

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