Variant report

Variant	rs62474863
Chromosome Location	chr8:79263192-79263193
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 78 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:75)

rs_ID	r²[population]
rs10255354	0.81[EUR][1000 genomes]
rs11973476	0.80[EUR][1000 genomes]
rs1228859	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1228860	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1228866	0.87[EUR][1000 genomes]
rs1228867	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1228868	0.85[EUR][1000 genomes]
rs1228875	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1228876	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1228878	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1228879	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1228880	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1228882	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1228883	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1228943	0.82[EUR][1000 genomes]
rs1228944	0.81[EUR][1000 genomes]
rs1228945	0.82[EUR][1000 genomes]
rs1228947	0.82[EUR][1000 genomes]
rs1228949	0.81[EUR][1000 genomes]
rs1228950	0.81[EUR][1000 genomes]
rs1228951	0.80[EUR][1000 genomes]
rs1228952	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1228953	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1228954	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1228956	0.82[EUR][1000 genomes]
rs1228958	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1228959	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1228961	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1228963	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1228966	0.80[EUR][1000 genomes]
rs1234535	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1234538	0.81[EUR][1000 genomes]
rs13227369	0.83[EUR][1000 genomes]
rs13238916	0.81[EUR][1000 genomes]
rs1557791	0.85[EUR][1000 genomes]
rs1634605	0.82[EUR][1000 genomes]
rs1634614	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1715510	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1733998	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1733999	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1974512	0.81[EUR][1000 genomes]
rs1987325	0.81[EUR][1000 genomes]
rs2106965	0.85[EUR][1000 genomes]
rs2158169	0.82[EUR][1000 genomes]
rs2214362	0.80[EUR][1000 genomes]
rs2372453	0.82[EUR][1000 genomes]
rs2428807	0.80[EUR][1000 genomes]
rs2428808	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2527528	0.82[EUR][1000 genomes]
rs2888321	0.82[EUR][1000 genomes]
rs4728554	0.81[EUR][1000 genomes]
rs4732549	0.81[EUR][1000 genomes]
rs505758	0.83[EUR][1000 genomes]
rs519663	0.81[EUR][1000 genomes]
rs530698	0.87[EUR][1000 genomes]
rs539643	0.81[EUR][1000 genomes]
rs540454	0.81[EUR][1000 genomes]
rs549975	0.81[EUR][1000 genomes]
rs561955	0.86[EUR][1000 genomes]
rs568973	0.81[EUR][1000 genomes]
rs577142	0.83[EUR][1000 genomes]
rs607120	0.81[EUR][1000 genomes]
rs608459	0.81[EUR][1000 genomes]
rs609308	0.81[EUR][1000 genomes]
rs611442	0.81[EUR][1000 genomes]
rs611503	0.81[EUR][1000 genomes]
rs612856	0.81[EUR][1000 genomes]
rs613335	0.81[EUR][1000 genomes]
rs620892	0.82[EUR][1000 genomes]
rs621903	0.81[EUR][1000 genomes]
rs625480	0.87[EUR][1000 genomes]
rs7789787	0.81[EUR][1000 genomes]
rs7808081	0.81[EUR][1000 genomes]
rs916865	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs961201	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831365	chr8:79128833-79281645	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	esv2761180	chr8:79195937-79291581	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv891056	chr8:79206819-79394667	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:79262800-79263200	Active TSS	HUES6 Cell Line	embryonic stem cell

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