Variant report

Variant	rs62475085
Chromosome Location	chr7:83316627-83316628
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs13240489	0.91[AFR][1000 genomes]
rs13241394	0.92[EUR][1000 genomes]
rs17457932	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs17459332	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs35961556	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs565318	0.86[EUR][1000 genomes]
rs62475082	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs62475083	0.83[AFR][1000 genomes]
rs62475089	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs659632	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017248	chr7:83189888-83385765	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	esv2753501	chr7:83250118-83336854	Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1017237	chr7:83262951-83423389	Weak transcription Active TSS Bivalent Enhancer Enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	esv2758122	chr7:83300506-83460112	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	esv2759541	chr7:83300506-83460112	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv888609	chr7:83307600-83403157	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv888610	chr7:83307600-83411926	Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:83314400-83320000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr7:83314800-83320200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr7:83315000-83318400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr7:83315000-83318600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr7:83315200-83318200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr7:83315400-83319200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr7:83315600-83319400	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr7:83316200-83316800	Enhancers	Fetal Lung	lung
9	chr7:83316200-83317200	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr7:83316400-83317200	Enhancers	iPS-20b Cell Line	embryonic stem cell
11	chr7:83316600-83316800	Enhancers	HUES48 Cell Line	embryonic stem cell
12	chr7:83316600-83318400	Weak transcription	HUES64 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links