Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:102789896..102791786-chr7:102883525..102886485,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000161048	Chromatin interaction

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs17136078	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs17136079	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs3864441	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4266582	0.83[AMR][1000 genomes]
rs4336542	0.83[AMR][1000 genomes]
rs4727563	0.83[AMR][1000 genomes]
rs4729887	0.83[AMR][1000 genomes]
rs4729888	0.83[AMR][1000 genomes]
rs4729890	0.87[AMR][1000 genomes]
rs4729891	0.83[AMR][1000 genomes]
rs57125388	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs58962103	0.83[AMR][1000 genomes]
rs61581136	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62480132	0.83[AMR][1000 genomes]
rs62480133	0.83[AMR][1000 genomes]
rs62480134	0.83[AMR][1000 genomes]
rs62480136	0.89[AMR][1000 genomes]
rs62480137	0.89[AMR][1000 genomes]
rs62481564	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62481612	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs62481613	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62481614	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62481615	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62481648	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs62481654	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62481655	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62482371	0.86[EUR][1000 genomes]
rs7777392	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv868996	chr7:102332827-102991361	ZNF genes & repeats Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
2	nsv831084	chr7:102778908-102964970	Strong transcription Active TSS Genic enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
3	esv1794417	chr7:102814101-102928545	Bivalent/Poised TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv981567	chr7:102850992-102924834	Bivalent/Poised TSS Flanking Active TSS Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:102884200-102886400	Weak transcription	Right Atrium	heart

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