Variant report

Variant	rs62482300
Chromosome Location	chr7:103521028-103521029
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs13236829	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13239321	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs16872658	0.88[EUR][1000 genomes]
rs17133124	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17133142	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17157057	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs3914124	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs3914125	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62482260	0.83[EUR][1000 genomes]
rs62482262	0.83[EUR][1000 genomes]
rs62482288	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1843940	chr7:103421702-103590285	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:103519600-103521400	Enhancers	Brain Germinal Matrix	brain
2	chr7:103520200-103523800	Weak transcription	K562	blood
3	chr7:103520800-103529200	Weak transcription	HepG2	liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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