Variant report

Variant	rs62485258
Chromosome Location	chr7:136645896-136645897
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:136638125..136641155-chr7:136643037..136646443,3	K562	blood:

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs10447876	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10447877	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10447878	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs10447879	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs10447880	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10488598	0.88[AFR][1000 genomes]
rs10954567	0.88[AFR][1000 genomes]
rs11971334	0.82[AFR][1000 genomes]
rs11981061	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11982108	0.83[AMR][1000 genomes]
rs12532092	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12532094	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12533847	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12536267	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12536293	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12536315	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12536341	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12539659	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12539738	0.88[AFR][1000 genomes]
rs12540313	0.88[AFR][1000 genomes]
rs12707333	0.88[AFR][1000 genomes]
rs13235468	0.88[AFR][1000 genomes]
rs1364405	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1364406	0.88[AFR][1000 genomes];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1424387	0.83[AFR][1000 genomes]
rs1424543	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17412549	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17412764	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs17412792	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs17496844	0.88[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs17496997	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs17497143	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17497261	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17497337	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs17497363	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs35850868	0.88[AFR][1000 genomes]
rs4629799	0.88[AFR][1000 genomes];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs55828513	0.88[AFR][1000 genomes];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs55895689	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs62485228	0.88[AFR][1000 genomes]
rs62485236	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62485237	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62485238	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62485239	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs62485240	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs62485241	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62485242	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62485243	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62485244	0.88[AFR][1000 genomes];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62485245	0.88[AFR][1000 genomes];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62485246	0.88[AFR][1000 genomes];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62485247	0.88[AFR][1000 genomes];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62485248	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62485252	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs62485254	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62485257	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73158708	0.88[AFR][1000 genomes]
rs73158738	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7789847	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7790583	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029192	chr7:136433278-137147566	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv831147	chr7:136583444-136755741	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	esv2753059	chr7:136633745-136893745	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:136642000-136649200	Weak transcription	Duodenum Smooth Muscle	Duodenum
2	chr7:136642000-136649200	Weak transcription	Fetal Stomach	stomach
3	chr7:136642000-136654600	Weak transcription	Right Atrium	heart
4	chr7:136643000-136646000	Weak transcription	Rectal Smooth Muscle	rectum
5	chr7:136643000-136647400	Weak transcription	Colon Smooth Muscle	Colon
6	chr7:136643000-136648800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr7:136643000-136649400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr7:136643400-136648400	Weak transcription	NH-A	brain
9	chr7:136643600-136646000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr7:136643600-136647800	Weak transcription	HUVEC	blood vessel
11	chr7:136644200-136647400	Weak transcription	Fetal Heart	heart
12	chr7:136645600-136647800	Weak transcription	Stomach Smooth Muscle	stomach

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