Variant report

Variant	rs62486509
Chromosome Location	chr7:104004887-104004888
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10487202	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17390505	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs59156995	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62486513	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv608067	chr7:103944237-104029408	Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Weak transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:104001600-104005200	Enhancers	HUES6 Cell Line	embryonic stem cell
2	chr7:104002400-104005200	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr7:104002800-104005200	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr7:104002800-104005400	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr7:104003000-104005000	Enhancers	iPS-20b Cell Line	embryonic stem cell
6	chr7:104003000-104005000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
7	chr7:104003200-104005200	Enhancers	H1 Cell Line	embryonic stem cell
8	chr7:104003600-104005200	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr7:104003800-104005400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr7:104004000-104005000	Enhancers	ES-I3 Cell Line	embryonic stem cell
11	chr7:104004000-104005600	Enhancers	Cortex derived primary cultured neurospheres	brain
12	chr7:104004200-104008400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr7:104004200-104010600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr7:104004600-104006600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr7:104004600-104007000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr7:104004800-104016600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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