Variant report

Variant	rs62488734
Chromosome Location	chr8:10000579-10000580
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs62488737	1.00[AMR][1000 genomes]
rs62488741	1.00[AMR][1000 genomes]
rs62488742	1.00[AMR][1000 genomes]
rs62488744	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916493	chr8:9806580-10029482	Weak transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv610263	chr8:9941021-10090149	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv1034343	chr8:9948342-10014155	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv831230	chr8:9953343-10139350	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv1027280	chr8:9958259-10058984	Enhancers Active TSS Genic enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent/Poised TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv1021921	chr8:9958259-10212555	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	esv1850829	chr8:9958321-10045451	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	nsv890344	chr8:9995515-10060638	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:9986200-10002200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr8:9988800-10002200	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr8:9991200-10004600	Weak transcription	Esophagus	oesophagus
4	chr8:9992200-10004800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr8:9992200-10004800	Weak transcription	Right Ventricle	heart
6	chr8:9992400-10000600	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr8:9992600-10000600	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr8:9995000-10000600	Enhancers	Fetal Brain Male	brain
9	chr8:9996400-10020200	Weak transcription	Pancreas	Pancrea
10	chr8:9996600-10000600	Weak transcription	Brain Angular Gyrus	brain
11	chr8:9996600-10004600	Weak transcription	Gastric	stomach
12	chr8:9996600-10004800	Weak transcription	Left Ventricle	heart
13	chr8:9996600-10005000	Weak transcription	Right Atrium	heart
14	chr8:9996600-10036200	Weak transcription	Primary T cells from cord blood	blood
15	chr8:9996800-10009600	Weak transcription	Primary neutrophils fromperipheralblood	blood
16	chr8:9997000-10010200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr8:9997200-10002600	Weak transcription	Liver	Liver
18	chr8:9998600-10001200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr8:9999600-10000800	Enhancers	Brain Hippocampus Middle	brain
20	chr8:9999800-10000600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr8:9999800-10000600	Enhancers	Brain Cingulate Gyrus	brain
22	chr8:10000000-10000600	Enhancers	Brain Anterior Caudate	brain
23	chr8:10000000-10000600	Enhancers	Brain Substantia Nigra	brain
24	chr8:10000000-10001400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr8:10000000-10003000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr8:10000200-10001400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
27	chr8:10000400-10000600	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
28	chr8:10000400-10000600	Enhancers	NH-A	brain
29	chr8:10000400-10000800	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
30	chr8:10000400-10000800	Enhancers	Adipose Nuclei	Adipose
31	chr8:10000400-10001000	Enhancers	HUES64 Cell Line	embryonic stem cell
32	chr8:10000400-10001400	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
33	chr8:10000400-10002000	Flanking Active TSS	Fetal Brain Female	brain
34	chr8:10000400-10003200	Flanking Active TSS	Brain Germinal Matrix	brain

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