Variant report

Variant	rs62499464
Chromosome Location	chr7:96754286-96754287
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:96745279..96751948-chr7:96754118..96758350,11	K562	blood:
2	chr7:96752164..96755225-chr7:96755419..96757960,4	K562	blood:

Variant related genes	Relation type
ENSG00000196636	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10269566	0.81[EUR][1000 genomes]
rs10499934	0.80[EUR][1000 genomes]
rs1343646	0.80[EUR][1000 genomes]
rs28458266	0.80[EUR][1000 genomes]
rs55844717	0.80[EUR][1000 genomes]
rs56130919	0.80[EUR][1000 genomes]
rs6465569	0.81[EUR][1000 genomes]
rs73233818	0.80[EUR][1000 genomes]
rs73233828	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019725	chr7:96749866-96850819	Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv539029	chr7:96749866-96850819	ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:96747400-96759800	Weak transcription	Spleen	Spleen
2	chr7:96747600-96759000	Weak transcription	Esophagus	oesophagus
3	chr7:96747600-96768200	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr7:96747800-96768200	Weak transcription	Aorta	Aorta
5	chr7:96748000-96759000	Weak transcription	Left Ventricle	heart
6	chr7:96748200-96759800	Weak transcription	Fetal Intestine Small	intestine
7	chr7:96748400-96767200	Weak transcription	Fetal Stomach	stomach
8	chr7:96748400-96768200	Weak transcription	Right Ventricle	heart
9	chr7:96748400-96768400	Weak transcription	Psoas Muscle	Psoas
10	chr7:96748600-96755800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr7:96748600-96756000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr7:96748600-96759200	Weak transcription	HMEC	breast
13	chr7:96749000-96755400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr7:96749000-96768200	Weak transcription	Right Atrium	heart
15	chr7:96749200-96755800	Weak transcription	HUES64 Cell Line	embryonic stem cell
16	chr7:96749200-96759800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
17	chr7:96749200-96768000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
18	chr7:96749400-96755600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr7:96749400-96768000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
20	chr7:96749400-96768200	Weak transcription	Primary T cells from cord blood	blood
21	chr7:96752200-96754800	Weak transcription	K562	blood
22	chr7:96752400-96766000	Weak transcription	HUES48 Cell Line	embryonic stem cell
23	chr7:96753600-96759000	Weak transcription	Primary T cells fromperipheralblood	blood

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