Variant report

Variant	rs625000
Chromosome Location	chr13:110875892-110875893
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs521699	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs626680	0.87[AMR][1000 genomes]
rs666338	0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052147	chr13:110765635-110917782	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
2	nsv1038914	chr13:110860219-111190104	Weak transcription Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:110846400-110879800	Weak transcription	Pancreas	Pancrea
2	chr13:110853600-110879800	Weak transcription	Gastric	stomach
3	chr13:110866200-110882400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr13:110866400-110885000	Weak transcription	Fetal Intestine Large	intestine
5	chr13:110868600-110881400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr13:110869000-110898800	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr13:110869400-110883600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr13:110869800-110879800	Weak transcription	Psoas Muscle	Psoas
9	chr13:110869800-110883200	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr13:110870200-110878200	Weak transcription	Fetal Kidney	kidney
11	chr13:110870200-110878400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr13:110870200-110881200	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chr13:110871200-110878200	Weak transcription	Duodenum Smooth Muscle	Duodenum
14	chr13:110871200-110883400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr13:110871400-110878200	Weak transcription	Rectal Mucosa Donor 31	rectum
16	chr13:110871600-110878400	Weak transcription	Osteobl	bone
17	chr13:110871600-110879800	Weak transcription	Spleen	Spleen
18	chr13:110873200-110876400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr13:110873400-110878000	Weak transcription	HSMM	muscle
20	chr13:110873600-110878000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr13:110874400-110876000	Weak transcription	Aorta	Aorta
22	chr13:110874400-110880200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
23	chr13:110874600-110876000	Weak transcription	Right Atrium	heart
24	chr13:110874600-110877400	Weak transcription	Rectal Smooth Muscle	rectum
25	chr13:110874600-110878000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr13:110874600-110878000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
27	chr13:110874600-110878000	Weak transcription	Fetal Lung	lung
28	chr13:110874600-110878000	Weak transcription	HUVEC	blood vessel
29	chr13:110874600-110878200	Weak transcription	Muscle Satellite Cultured Cells	--
30	chr13:110874600-110878200	Weak transcription	NHDF-Ad	bronchial
31	chr13:110874600-110878400	Weak transcription	Colon Smooth Muscle	Colon
32	chr13:110874600-110879800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr13:110874600-110879800	Weak transcription	Lung	lung
34	chr13:110874600-110881600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
35	chr13:110874600-110881800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
36	chr13:110874600-110881800	Weak transcription	Placenta Amnion	Placenta Amnion
37	chr13:110874800-110876000	Weak transcription	Adipose Nuclei	Adipose
38	chr13:110874800-110876000	Weak transcription	Left Ventricle	heart
39	chr13:110874800-110877400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr13:110874800-110877400	Weak transcription	Fetal Muscle Leg	muscle
41	chr13:110874800-110877400	Weak transcription	Skeletal Muscle Male	skeletal muscle
42	chr13:110874800-110878000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
43	chr13:110874800-110878000	Weak transcription	Fetal Stomach	stomach
44	chr13:110874800-110878000	Weak transcription	Ovary	ovary
45	chr13:110874800-110878000	Weak transcription	NHLF	lung
46	chr13:110874800-110878200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
47	chr13:110874800-110878200	Weak transcription	Fetal Heart	heart
48	chr13:110874800-110878600	Weak transcription	Fetal Intestine Small	intestine
49	chr13:110874800-110878600	Weak transcription	Stomach Smooth Muscle	stomach
50	chr13:110874800-110878600	Weak transcription	NHEK	skin

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