Variant report

Variant	rs62500788
Chromosome Location	chr7:96943300-96943301
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10953209	0.84[ASN][1000 genomes]
rs1420166	0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1420173	0.84[ASN][1000 genomes]
rs62500789	0.91[ASN][1000 genomes]
rs7796570	0.91[AFR][1000 genomes];0.82[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs9692573	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv981403	chr7:96934701-96946503	ZNF genes & repeats Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
2	nsv1028319	chr7:96940309-97012717	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:96943000-96943400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr7:96943000-96943400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr7:96943000-96943800	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr7:96943200-96945600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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